Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9164g00003 ATGAGTGGCCGGTTTTCTCGCACAATTTACGTCGGCAACCTGCCTTCTGACATAAGAGAGTCAGAAATTGAAGATCTCTTCTACAAGTATGGTCGTATAATGGATATTGAATTGAAGATTCCTCCCCGCCCTCCATGTTATTGTTTTGTTGAGTTTGATAATGCTCGAGATGCTGAAGATGCAATTCGAGGTAGAGATGGATACAACTTTGATGGTTGTCGGTTACGGGTGGAACTTGCTCATGGCGGTAGAGGACCATCGTCAAGTGATCGACGTGGATATGGAGGAAGTGGTGGGGGTGGGGCTGGGGCTGGGGCTGGTGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGGGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCTCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTATTCGCAAACTGGATGACACCGAGTTTAGAAATCCTTGGGCGCGAGCCTATATTCGGGTGAGAAAGTATGAGAGTAGTCGTTCTAGGAGCCGCAGCAGAAGCCCCAGAAGCCCCAGCAGGAGTAGGAGTCCGAAAAGGGCCAGAAGTAGATCCTTGGAGCGTTCTGTGTCTAGGTCACGATCTAGATCACGATCAGCATCACCAATCAAATCTTCAAGGCCAAGATCACGCTCACGGTCTGGATCTCCTCGCCAGGTGCTGTCAGGTAGTGGATGA 792 0.4836 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGSGGGGAGAGAGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYESSRSRSRSRSPRSPSRSRSPKRARSRSLERSVSRSRSRSRSASPIKSSRPRSRSRSGSPRQVLSGSG 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9164g00003 263 MobiDBLite consensus disorder prediction 81 107 - -
Vium9164g00003 263 MobiDBLite consensus disorder prediction 196 263 - -
Vium9164g00003 263 MobiDBLite consensus disorder prediction 218 232 - -
Vium9164g00003 263 FunFam serine/arginine-rich splicing factor SR34A-like 2 118 - -
Vium9164g00003 263 Gene3D - 119 196 IPR012677 -
Vium9164g00003 263 FunFam serine/arginine-rich splicing factor SR34A-like 119 196 - -
Vium9164g00003 263 CDD RRM2_SF2_plant_like 119 194 - -
Vium9164g00003 263 Gene3D - 2 117 IPR012677 -
Vium9164g00003 263 SMART rrm1_1 120 189 IPR000504 GO:0003723
Vium9164g00003 263 SMART rrm1_1 8 78 IPR000504 GO:0003723
Vium9164g00003 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 183 IPR000504 GO:0003723
Vium9164g00003 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Vium9164g00003 263 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 253 - -
Vium9164g00003 263 SUPERFAMILY RNA-binding domain, RBD 6 189 IPR035979 GO:0003676
Vium9164g00003 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Vium9164g00003 263 MobiDBLite consensus disorder prediction 233 263 - -
Vium9164g00003 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9164g00003 Vium-Chr9164 25343 31035 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9164g00003 6 203 Eukaryotic Initiation Factors Gene Family AT4G34110 23.301 6.55e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9164g00003 K12890 - gmx:100800653 369.392