Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9164g00001 ATGAGTGGCCGGTTTTCTCGCACAATTTACGTCGGCAACCTGCCTTCTGACATAAGAGAGTCAGAAATTGAAGATCTCTTCTACAAGTATGGTCGTATAATGGATATTGAATTGAAGATTCCTCCCCGCCCTCCATGTTATTGTTTTGTTGAGTTTGATAATGCTCGAGATGCTGAAGATGCAATTCGAGGTAGAGATGGATACAACTTTGATGGTTGTCGGTTACGGGTGGAACTTGCTCATGGCGGTAGAGGACCATCGTCAAGTGATCGACGTGGATATGGAGGAAGTGGTGGGGGTGGGGCTGGGGCTGGGGCTGGTGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGGGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCTCGTGATAGTGAAGTGATTTGTGGCTGCTCCCTCTATTTGCATCTTGCCAAATGGGCTGTGACCTCTGGCATTGGTAGACAGCCTTTCATCTGCGATTTCTGCAGCTGCTGCGACACAATGATTCGGAGAGGAGGAGTTGGTATTGATGGGAGAAGAGGCCTGGGTTTTTGTTTTTTGTTGGTGGTAGGGGATGACGGATGA 654 0.4801 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGSGGGGAGAGAGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEVICGCSLYLHLAKWAVTSGIGRQPFICDFCSCCDTMIRRGGVGIDGRRGLGFCFLLVVGDDG 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9164g00001 217 FunFam serine/arginine-rich splicing factor SR34A-like 2 118 - -
Vium9164g00001 217 SUPERFAMILY RNA-binding domain, RBD 6 153 IPR035979 GO:0003676
Vium9164g00001 217 CDD RRM1_SF2_plant_like 8 79 - -
Vium9164g00001 217 MobiDBLite consensus disorder prediction 81 106 - -
Vium9164g00001 217 Gene3D - 119 187 IPR012677 -
Vium9164g00001 217 Gene3D - 2 118 IPR012677 -
Vium9164g00001 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Vium9164g00001 217 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 155 - -
Vium9164g00001 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Vium9164g00001 217 SMART rrm1_1 120 183 IPR000504 GO:0003723
Vium9164g00001 217 SMART rrm1_1 8 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9164g00001 Vium-Chr9164 25334 29574 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9164g00001 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.895 4.58e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9164g00001 K12890 - gmx:100786491 261.536