Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9155g00001 ATGTTGAAGTTGTTGGACATTTTACAACAAGAAAAAACTGAAGATTGGGCAAATGCTAAAGGTGTAACTAGCCGTGAGGAAAGTGAAGAGAGTGAACTTGTGTCGCTTTCTCTTGGGATATCATTGAAAGGAAAGACTAAGGGTGAGAGGAAGCATTGCAAGAGAGAAGATGAGGGTATGGATAAAGGACTCAGACTTGGGTTAGATATCAATTTGGATCCTGTAGATCATGCTGAAGCTGCAAATATTTCCAGCACTGAAAGTAGTTTTGGTGAGGGAGGGAAGGAAGAGGAACCAAGTGAGATGTGGCCACCCAGTAAAGTTTTGAAGGCAATGAAAAATGTTGATAAAAGTGAAGCTTCTCAAAATGATCAGCCCAAGAAAACTAGGGTTTCCATCAGAGCCAGATGTGATACTCAAACGATGAATGATGGGTGTCAATGGAGAAAATATGGACAGAAAATGGCAAAAGGAAATCCATGTCCCCGAGCTTACTATCGATGCACTGTTTCTCCATTGTGTCCTGTAAGAAAACAGGTGCAAAGATGTGCTCAAGACATGTCCATATTGATCACAACCTATGAAGGAATCCACAATCATCCACTTCCTATATCAGCGACTGCAATGGCTTGCACAACTTCTGCTGCAGCTTCCATGCTTCAATCTCCCTCATTGAGTTCACAGAATGGACATGGACTAGTCAATTCAGCTATATCCTCCATTACCAATTTCAGTGCTCCTAATTACAACCTTGATAATGCTCTAAACTTCTCCACATACCATGTTTCAAGACCACATCAATTCTACTTTCCAAACTCATCTATTTCAAGCTTGAATTCTCACCCCACAATCACTTTGGACCTTACAGCACCCCCAACATCCTCAAACCTTAATTTTTCCTCAGGTTTCTCTCCTCTGCAATCTAGCATGTCTCCATCACCTTGGAGCAGTTACAGTAGTTACTTCAACTCAGGACCACTGACTCATAAAAGAAACCATGGTGATTACTTGCTAAACACTGGACATCAAAATCAGCCATATCTTGAGCATCTCCATCACCCTATTTGCACGAGCAACAATAACTTTTCTCAACCCTCTTTGCCGGATTCCATTATTGCTGCAACCAAGGCAATCACAAGCAATCCAAAATTTCAATCAGTGTTGGCAACTGCTCTCACAACATATGTTGGCAATGAAGCTGGTGGTGTTAGGTTAAGAGAAAACCATGTTCTTGAGAATGCAGAACTGAACTTAAAGCTATGTAGTGAAAACACCATAGGATGTGCATCATCAAGGTACTTGAACGTGTCTTCTTCTGCTCTTAACCCTCAACAAGGAAACTCAAGTATATTTCCACTACCATCATTACCTGAGCAATGGAAGTAA 1386 0.412 MLKLLDILQQEKTEDWANAKGVTSREESEESELVSLSLGISLKGKTKGERKHCKREDEGMDKGLRLGLDINLDPVDHAEAANISSTESSFGEGGKEEEPSEMWPPSKVLKAMKNVDKSEASQNDQPKKTRVSIRARCDTQTMNDGCQWRKYGQKMAKGNPCPRAYYRCTVSPLCPVRKQVQRCAQDMSILITTYEGIHNHPLPISATAMACTTSAAASMLQSPSLSSQNGHGLVNSAISSITNFSAPNYNLDNALNFSTYHVSRPHQFYFPNSSISSLNSHPTITLDLTAPPTSSNLNFSSGFSPLQSSMSPSPWSSYSSYFNSGPLTHKRNHGDYLLNTGHQNQPYLEHLHHPICTSNNNFSQPSLPDSIIAATKAITSNPKFQSVLATALTTYVGNEAGGVRLRENHVLENAELNLKLCSENTIGCASSRYLNVSSSALNPQQGNSSIFPLPSLPEQWK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9155g00001 461 ProSiteProfiles WRKY domain profile. 137 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium9155g00001 461 MobiDBLite consensus disorder prediction 120 134 - -
Vium9155g00001 461 Pfam WRKY DNA -binding domain 143 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium9155g00001 461 SMART WRKY_cls 142 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium9155g00001 461 MobiDBLite consensus disorder prediction 115 134 - -
Vium9155g00001 461 Gene3D WRKY domain 127 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium9155g00001 461 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 33 399 IPR044810 GO:0003700
Vium9155g00001 461 MobiDBLite consensus disorder prediction 80 106 - -
Vium9155g00001 461 FunFam probable WRKY transcription factor 31 127 204 - -
Vium9155g00001 461 SUPERFAMILY WRKY DNA-binding domain 135 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9155g00001 Vium-Chr9155 14444 16373 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9155g00001 2 429 WRKY Transcription Factor Family AT5G15130 36.534 8.73e-58 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium9155g00001 WRKY 1.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9155g00001 - - pvu:PHAVU_002G089700g 637.106