Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9141g00002 ATGTCAAAGTCTCCCTCTCATGAACCGCGACAGTCCATTTATTCTGGCTCTCTTCCTGGGGAATTTAATGAGGCAATGGGAATGGATGATCCAGAATCTACAATGGCAACAGTTGCTAATTTTGTGGAGCAACTGCATGCCAATTTGTCATCACCGGTTGAGAAAGAAACCGTTACAGCGCGCTTACTAGGTATTGCCAGGAGAAGAAAGGATGCTAGAACACTCATAGGTTCTCATGCCCAAGCCATGCCATTGTTCATAAACATTCTCAGAAATGGAACACCTCTTGCAAAAGTTAATGTTGCTTCCACTCTGAGTGTCCTGTGCAAAGATGAAGAACTGAGGTTAAAAGTACTACTTGGTGGTTGTATCCCACCATTATTGTCACTTTTAAACTATGAATCCACGGAGACCAGGAAGGCTGCCGCTGAAGCATTATATGAAGTTTCCTCAGGTGGTCTGTCTGATGATCATGTTGGTATGAAAATTTTTGTCACAGAGGGTGTAGTTCCAACCTTATGGAGTCAACTAAATCCAAAGAAGAAGGAAGACAAAATTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTTTGTGGTGACAAAGATGGCTACTGGAAAGCAACATTAGAAGCTGGAGGCGTGGATATCATAGTGGGGCTCTTGTCTTCAGACAATTCTGTTTCTCAGTCAAATGCAGCTTCTCTATTGGCACGTTTAATGCTGGCTTTCAGTGATAGTATCCCCAAAGTAATAGACTCTGGAGCAGTCAAAGCTTTACTTCAGCTTGTTGGTCCAAAAAATGACATTTCTGTTAGGGCTAGTGCTGCTGATGCCCTAGAAGCTCTCTCTTCAAAATCTACTATGGCTAAAAAGGTCATTGTTAATGCAGATGGAATTCCAATCCTTATTGGAGCAATAGTTGCTCCTTCTAATGAGTGTATGCAAGGTGATGGTGGCCAGGCTCTACAAGAGCACGCAACTCGAGCTTTAGCCAATATCTGCGGTGGCATGTCTGCATTAATACTATATCTTGGAGAGCTTTCACGTTCTCCTAGCCTTGATGCTCCAGTTGGTGATATAATTGGGGCTCTTGCTTATACACTCATGGTCTTTGAGGAAAAAGTAGGTGTTGATGAGAAACATTTTGATGCAACTCAGATAGAGGATATTCTAGTAACTCTTCTAAAGCCTCGGGACAGCAAACTGATTCAAGAGTGTGTCCTTGAGGCTATGGCTAGCCTTTATGGAAACATCTGTCTCTCAAAGTGGCTCATTCAAGCTGATTCAAAGAAGGTTCTTATTGGACTTATAACCATGGCTGCCACTGACGTGCAAGAGTATCTGATACTTTCGTTGACAACCTTGTGTAGTGATAAGATTGGAGTATGGGAGGCCATAAAAAAGAGAGAAGGTATCCAATTACTAATATCATTGCTTGGATTATCCAGTGAGCAGCATCAAGAGTACTCAGTTCAGCTGCTAGCGATCTTAACTGAACAGGTTGATGACAGCAAGTGGGCAATTACTGCTGCTGGAGGGATTCCTCCACTGGTGCAGTTGTTGGAGACAGGATCACAGAAAGCAAGAGAGGACGCAGCAAATGTTCTGTGGAGTTTGTGCTGTCACAGTGAAGATATTCGCGCTTGTGTTGAAAGTGCTGGAGCCATACCAGCATTTTTATGGCTTCTTAAGAGTGGTGGACCAAAAGGGCAGGAAGCTTCTGCTATGGCACTAACAAAGCTTGTTCGAGTAGCTGATTCTGCCACAATTAATCAGCTATTAGCATTGCTCCTGCGGGATTCTCCAAGCTCGAAAGCCCACATAATCCGAGTTTTAGGTCATGTTCTTACCATGGCTTCACAGAATGATCTCCTTGAAAAAGGTTCTGCAGCTAACAAGGGCTTGAGATCTCTAGTTCAGGTCCTCAATTCATCCAATGAGGAAACCCAAGAATATGCAGCTTCGGTTCTAGCTGATTTGTTTATCACAAGACAAGACATATGTGATAGTCTTGCAACTGATGAGATTGTGCTTCCTTGCATGAAGCTTTTGACTAGTAAAACTCAAGTTGTTGCCACTCAATCAGCTCGAGCACTAAGTGCTCTGTCTCGTCCAACAAAGAACAAGGCTGCAAATAAAATGTCTTATATTGTAGAGGGTGATGTTGAGCCACTAATCAAGTTAGCTAAAACATCCTCTGTTGATGCTGCTGAAACTGCTGTTGCTGCATTGGCCAATCTTCTCTTTGATCCTTTTATTGCTGCTGAGGCTCTAGCTGAAGATGTTGTTTCAGCTTTAACTAGAGTTCTGGCAGAAGGGTCCTTGGAAGGTAAACAAAATGCATCTCGTGCACTTCATCAATTATTGAAGCATTTTCCTGTAGGTGATGTTCTTAAGGGGAGTGCTCAATCTCGTTTCACTGTGCTTGCACTTGTTGATTTGTTAAAAGCTATGGATATGGACGAAACTGATGCTGCTGATGCTTTAGAAGTAATCGCATTGCTAGCCAGGACCAAGAAAGGTGTCAGCAACAATTACTCTGCATGGTCAGCTCTGGCTGAAATACCGTCAAGCTTAGAACTTCTTGTCTGCTGCCTGGCTGAGGGGCCCTCCCTTGTGCAGGACAAGGCAATTAAAATTCTATCTAGACTTTGTGGGGATCAGCCTGCTGTTCTTGGTGATTTGTTATCTACTAGTTCCAGATCCATTGGTTCATTGGCTAATAGAATAATGAACTCCTCCAGTCTAGAAGTAAAAATTGGAGGGTCTGCCTTGCTAATTTGTGCTGCTAAGCAGAAGAAAGAGCTTTCAATGGATTCACTTGACGTTTCTGGGCATCTGAAACCATTAATATATTCTTTAGTTGAAATGATAAAGCAAAGTTTTAAGTATTCTTCTTTAGAAATTGAAGTTCTCGCTTCTAAAGGTTTTATGGAGAGAAATGGTTTTCAAGAAGTTGATGAGTTTGATATTCCTGATCCTGCCACTGCCTTGGGAAGCACTATTGCGATGTGGTTGCTTTCAGTTATTGCTTCTTTCCATATAAAGAGCAAGCCCACAATTATGGAAGCTGGTGGACTTGAAGTTCTCTCGGACAAACTTGGAAGATATACTTCAAATCCACAGGCAGAATATGAGGATACAGAAGGAATATGGATCAATGCCTTGCTGTTGGCCATTTTATTTCAGGATACGAATGTTGTTCAGTCTCCTGTGACAATGCGCATTATACCTTCTATCACTCTTCTGCTAAGATCTGATGAAGTAATTGATAAATATTTTGCTGCCCAGGCTATGGCCAGTCTTGTTTGTAATGGCAATAAGGGAATAGATCTTGCCATTGCAAATTCTGGTGCTGTTGCTGGATTGATAACTATAATTGGGCATGTAGAGTCAGATATGCCTAATCTCATGGATTTATCAGAAGAATTTTCATTGGTACAAAACCCTGATCAAGTTGTTTTGGATCACCTTTTTGAAATTGAAGATGTAAAGGTGGGTTCTACGGCCAGGAAATCTATACCGCTCTTAGTGGATCTCCTGAGACCAATACCAGAAAGGCCTACTGCTCCACCAGTTGCTGTTAGACTCTTGATATCCATTGCAGATGGAAGTGATAGCAATAAATTAATCCTTGCTGAAGCTGGAGCTCTTGAAGCTTTGAACAAATACCTGTCCTTGAGTCCTCAAGACTCAACTGAGGCTGCTATATCTGAGTTATTGAGAATATTATTTTGCAATTCTGATCTCATTAAACACGAAGCAGCAATCAGTTCATTGAACCAACTTATAGCTGTTTTGCGTCTTGGATCAAGAACTGCTAGATACAGTGCAGCAAGAGCACTTCACGAACTTTTTGATGCTGACAACATTAGAGACTCAGAATTAGCTAAACAAGCTATTCAACCATTGGTTGATATGCTTAACACGACATCAGGGCATGAACAGGAGGCTGCTCTCATGTCCTTGATCAAGTTAACTTCAGGAAATTCTTCAAAAGTATCTCTTCTTACTGATATGGAAGGAAACCCACTTAAATGTCTATACAAAATACTGTCTTCTGCTTCATCCTTGGAACTGAAGAGCCATGCTGCCCAACTCTGCTTTGCCCTTTTTGCCAATAGCAAGATCAGAGCAGATCCAGTTGCCTCAGAATGCATAGAACCCCTTATATTACTGTTGCAGTCTGGTTCTGAGACAGCAATAGAGTCTGGGGTTTGTGCTTTTGAGAGATTGTTGGAAGATGAACAACAGGTAGAGCTTGCAGCAGCCTACAATATTGTGGATCTCCTTGTGAGCTTGGTTTCCGGTACTAACTATCAGCTTATTGAGGCTACCGTATCTGCTCTTATCAAATTGGGCAAAGATAGGACTACAAGTAAACTGGACATGGTGAAAGCTGGCATTATTGATAATTGTCTCAAGCTACTACAATTAGCACCTAGCTCTTTATGTTCCACAATATCTGAGCTCTTTCGCATTTTAACTAATAGTAGCGCAATTGCAAGAAGTTCAGATGCTGCAGAAATTGTAGAACCTCTTTTCCATGTTTTGCTCCGTCGAGATTTCAACTTATGGGGACAGCATAGTGCATTACAAGCACTTGTAAATATATTGGAGAAACCACAAAGTCTTGCCACCTTGAAGCTTACTCCAAGCCAAGTTATTGAACCCTTGATTTCTTTTCTGGAATCCCCATCCCAAGCTATTCAGCAGCTTGGCACAGAACTGTTATCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATTACAACTAAGAATGCAGTTGTGCCCCTCGTACAGCTTGCAGGAATTGGAATATTAAACTTACAGCAAACAGCTATAAAGGCATTGGAAAAAATTTCCACTAGTTGGCCAAAGGCTGTTGCTGATGCAGGAGGTATTTTTGAGCTTGCAAAGGTTATTATTCAAGAAGACCCTCAGCCACCGCATGCACTCTGGGAATCAGCTGCTCTAGTTCTCTCTAATGTATTACATTCCAATGCCGATTACTACTTTAAAGTTCCTGTGGTAGTTCTTGTAAAACTTTTGCACTCAACACTTGAGAATACAATTAGCATAGCCCTTAATGCTTTAATAGTTCATGACAGAAGTGATGCTTCAAGTGCTGAGCAGATGATGGAAGCTGGAGTTATAGAGGCTCTGTTAGACCTGTTAAGATCTCATCATTGTGAAGAAGCATCTGGCAATTTATTAGAAGCTTTATTTAACAATGTGAGAGTACGAGAGATGAAGGTGTCTAAATATGCTATAGCGCCTTTGTCCCAGTATCTCTTGGATCCACAAACCAGATCACAGTCTGGTAAGCTTCTTGCTGCTTTAGCTCTGGGAGATCTTTCCCAGCATGAAGGACATGCTAGATCTAGTGCCTCTGTTTCTGCATGTCGGGCATTGATAAGTTTACTTGAAGATCAGCCAACTGAAGAAATGAAGGTGGTAGCTATATGTGCATTGCAAAACTTTGTCATGAACAGCAGGACAAATAGACGAGCTGTTGCAGAAGCTGGAGGCATACTGGTGATTCAAGAATTGCTGCTGTCTCCAAACACAGAAGTTGCTGCACAAGCTGCTTTACTGATCAAATTTTTGTTTTCTACACATACACTGCAAGAATATGTATCAAATGAGTTGATCAGGTCTTTGACAGCTGCACTGGAAAGAGAGTTATGGTCAACTGCCACAATCAATGAAGCGGTTCTGAAAACTTTGCATGTGATATTCATGAACTTCCCTAAGCTCCACACATCTGAAGCAGCAACTCTTTGCATTCCTCATTTGGTAGGTGCACTTAAATCTGGTGGTGAAGCGGCTCAGGACTCTGTACTTGACACGTTTTGCTTGCTAAGACAATCATGGTCAACTATGCCAATAGATATAGCAAAGTCCCAAGCTATGATTGCTGCTGAAGCCATCCCCATTTTGCAAATGCTCATGAAAACCTGCCCACCTAGTTTCCATGAGAGGGCAGATACTCTTCTGCACTGCTTACCAGGGTGTTTGACTGTCACCATTAAGCGTGGAAACAACCTCAGGCAAACTATGGGAAGCACTAACGCATTCTGCCGGTTAACAATAGGAAATGGTCCTCCAAAACAAACCAAGGTAGTGAATCATAGTACTTCTCCCGAATGGAAAGAAGGATTCACTTGGGCATTTGATGTACCTCCAAAGGGCCAAAAGCTACATATCATATGCAAAAGCAAGAATACTTTTGGGAAGACAACTCTTGGAAGAGTCACCATTCAAATTGATAAAGTTGTATCAGAGGGGGTTTATAGTGGATTATTCAGTCTTAATCATGATGGTAACAAAGATGGTTCTTCCCGAACACTTGAAATTGAGATTATATGGTCCAACAGGATCTCCAATGATGACACTTGA 6408 0.4173 MSKSPSHEPRQSIYSGSLPGEFNEAMGMDDPESTMATVANFVEQLHANLSSPVEKETVTARLLGIARRRKDARTLIGSHAQAMPLFINILRNGTPLAKVNVASTLSVLCKDEELRLKVLLGGCIPPLLSLLNYESTETRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWSQLNPKKKEDKIVEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNSVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLVGPKNDISVRASAADALEALSSKSTMAKKVIVNADGIPILIGAIVAPSNECMQGDGGQALQEHATRALANICGGMSALILYLGELSRSPSLDAPVGDIIGALAYTLMVFEEKVGVDEKHFDATQIEDILVTLLKPRDSKLIQECVLEAMASLYGNICLSKWLIQADSKKVLIGLITMAATDVQEYLILSLTTLCSDKIGVWEAIKKREGIQLLISLLGLSSEQHQEYSVQLLAILTEQVDDSKWAITAAGGIPPLVQLLETGSQKAREDAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSGGPKGQEASAMALTKLVRVADSATINQLLALLLRDSPSSKAHIIRVLGHVLTMASQNDLLEKGSAANKGLRSLVQVLNSSNEETQEYAASVLADLFITRQDICDSLATDEIVLPCMKLLTSKTQVVATQSARALSALSRPTKNKAANKMSYIVEGDVEPLIKLAKTSSVDAAETAVAALANLLFDPFIAAEALAEDVVSALTRVLAEGSLEGKQNASRALHQLLKHFPVGDVLKGSAQSRFTVLALVDLLKAMDMDETDAADALEVIALLARTKKGVSNNYSAWSALAEIPSSLELLVCCLAEGPSLVQDKAIKILSRLCGDQPAVLGDLLSTSSRSIGSLANRIMNSSSLEVKIGGSALLICAAKQKKELSMDSLDVSGHLKPLIYSLVEMIKQSFKYSSLEIEVLASKGFMERNGFQEVDEFDIPDPATALGSTIAMWLLSVIASFHIKSKPTIMEAGGLEVLSDKLGRYTSNPQAEYEDTEGIWINALLLAILFQDTNVVQSPVTMRIIPSITLLLRSDEVIDKYFAAQAMASLVCNGNKGIDLAIANSGAVAGLITIIGHVESDMPNLMDLSEEFSLVQNPDQVVLDHLFEIEDVKVGSTARKSIPLLVDLLRPIPERPTAPPVAVRLLISIADGSDSNKLILAEAGALEALNKYLSLSPQDSTEAAISELLRILFCNSDLIKHEAAISSLNQLIAVLRLGSRTARYSAARALHELFDADNIRDSELAKQAIQPLVDMLNTTSGHEQEAALMSLIKLTSGNSSKVSLLTDMEGNPLKCLYKILSSASSLELKSHAAQLCFALFANSKIRADPVASECIEPLILLLQSGSETAIESGVCAFERLLEDEQQVELAAAYNIVDLLVSLVSGTNYQLIEATVSALIKLGKDRTTSKLDMVKAGIIDNCLKLLQLAPSSLCSTISELFRILTNSSAIARSSDAAEIVEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQEDPQPPHALWESAALVLSNVLHSNADYYFKVPVVVLVKLLHSTLENTISIALNALIVHDRSDASSAEQMMEAGVIEALLDLLRSHHCEEASGNLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGKLLAALALGDLSQHEGHARSSASVSACRALISLLEDQPTEEMKVVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVAAQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEAVLKTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGGEAAQDSVLDTFCLLRQSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLRQTMGSTNAFCRLTIGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKTTLGRVTIQIDKVVSEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNRISNDDT 2135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9141g00002 2135 Gene3D - 1346 1604 IPR011989 -
Vium9141g00002 2135 CDD C2 2009 2099 - -
Vium9141g00002 2135 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Vium9141g00002 2135 SUPERFAMILY ARM repeat 1611 2005 IPR016024 -
Vium9141g00002 2135 Gene3D - 1163 1345 IPR011989 -
Vium9141g00002 2135 SMART arm_5 156 200 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 1834 1874 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 665 705 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 201 242 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 244 285 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 1416 1456 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 1375 1415 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 710 750 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 287 336 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 544 584 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 1543 1584 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 502 542 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 459 500 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 1708 1749 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 111 151 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 623 663 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 1206 1246 IPR000225 GO:0005515
Vium9141g00002 2135 SMART arm_5 751 791 IPR000225 GO:0005515
Vium9141g00002 2135 Gene3D C2 domain 2009 2133 IPR035892 -
Vium9141g00002 2135 Gene3D - 996 1144 IPR011989 -
Vium9141g00002 2135 Gene3D - 155 352 IPR011989 -
Vium9141g00002 2135 Gene3D - 707 969 IPR011989 -
Vium9141g00002 2135 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 21 2129 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vium9141g00002 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Vium9141g00002 2135 SUPERFAMILY ARM repeat 855 1128 IPR016024 -
Vium9141g00002 2135 MobiDBLite consensus disorder prediction 1 18 - -
Vium9141g00002 2135 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2006 2112 IPR035892 -
Vium9141g00002 2135 Gene3D - 366 706 IPR011989 -
Vium9141g00002 2135 Gene3D - 24 154 IPR011989 -
Vium9141g00002 2135 SUPERFAMILY ARM repeat 1173 1498 IPR016024 -
Vium9141g00002 2135 SUPERFAMILY ARM repeat 81 838 IPR016024 -
Vium9141g00002 2135 MobiDBLite consensus disorder prediction 1 27 - -
Vium9141g00002 2135 ProSiteProfiles C2 domain profile. 1988 2105 IPR000008 -
Vium9141g00002 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Vium9141g00002 2135 SMART C2_3c 2008 2104 IPR000008 -
Vium9141g00002 2135 Pfam C2 domain 2008 2107 IPR000008 -
Vium9141g00002 2135 Gene3D - 1610 2008 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9141g00002 Vium-Chr9141 6582 17229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9141g00002 432 714 U-box Gene Family AT2G23140 26.962 5.14e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9141g00002 - - gmx:100796864 3791.51