Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium913g00001 ATGGACACAACTTGCACACGAACTGCTGTAAGAAGCATCCTCTTCCTCTTCTTTATGTGGTGCCTTTCTTTCCTTTCCACAGCAGACGATATCTATCATCCCACTGAGCTCTTCAGCATCAGCTGTGGCTCATCCACCGACTTCTCCACTCACGACACTCGGAATTGGACTTCAGACATCCACTTCCTCTCTCCAATCAACCTCTCAGTTTCTGCTCCTTCACTCACACAGTCTACCATACAGGGTCCCTACACCCATGCTCGTCTCTCTCACTCACCATTCACTTACTCATTCCCTCTCACACAAGGCCCCAAGTTCATTCGTCTCTTCTTCTACTCTACTTCATACCAAAACTTCCCTCGCTCCCTATCCTCTTTCTCAGTCAAAGCAGGCCCTTACACCCTCCTTCAAGATTTCAATGCATCCCTCAACGCCGATGCCGATGATGACCCTAGCCACCCTGACATCTTGTTCAGAGAGTATTGCATCAACTTCCAAGATGGTGACAAGCTAAACATAACCTTCCTTCCTAGCACCACATATTCCTACGCTTTCATCAACGGGATCGAGATTGTTTCGATGCCCCCTTATCTCTACTACACCGATCCTGACGATTCCATAGGGCAGCCGCAACTTGTTGGCACCATGACACCATTTGTCATTGAGAACAAATTTGCTCTCGAGACCCTGTACAGGTTAGTCGCTTCCGGAATTGAAATCCCTTCCTCAGGGGACACGGGTATGCTCAGAACGTGGGAACCTGACATCAAGTACATAACTACTCAAAGTAGAGTATCAGTTGATTATGGGAAAGATGAAAAGCTGACGTTCATTACAACCTATAACTACACGGCACCAGACCAAGTGTACAGAACCGTTCGGAATATGGGACTTAATGGCTCTATCAACATGGGTTTCAATCTCACATGGCAACTTCCCGTTGATTCTGGCTTCATCTACATGCTACGGTTACACTTTTGCCAGCTTGATCCGAGGGTCAGTAGCTCTGGTGACCTCATTTTCAACATCATGATAGCGGACCAGTTGGCTAGCAATAGGGCTGACGTTCTCATGTGGACTGATAATCGGAAGGGTGTCCCGGTGGTTAAAAACTACGTAGTTCCCATACAAGGAAATCTTGACAAAGCAAATCTATCAGTGAAACTGCATCCTAGCCCTACAAGCCGGATCAAAGACGCAGTTATCAACGCAATTGAAGTCTTCAAAATCAACGACTCAATATCTAGTCTCGCCGGACAAGACCCAAACCCTCCTCCACAAAAGCCCAAAGGTCCCCTTAGCTCAAACAAGAAAAGTAGCGTCGTCAAGAAAAGCCGAGAAGCCATAATAGGAGCAGTTGTAGGTGTCCTTTTGCTCTCTTCAATTGTTGTTTTCTTGCTCATCAAATGCAAAAAGAATACCGCAGTTGACAGTGGTTCCAGCAAAAAGGGCGGAACTTCCCGCGGGGTTGACTCCTCGTCACTACCAACCAACCTCTGCAGATACTTCTCCATTGCAGAAATCAGAGCCGCCACCGATAACTTCAACGAACAATTGGTGGTTGGCGTGGGAGGCTTCGGCAACGTGTACAAAGGCTACATAGATGAGGGTTCAGTGCCTGTTGCAATCAAAAGGCTCAAACCCGGTTCTCAGCAAGGTATGCAGGAGTTCATGAACGAAATCGAAATGCTCTCTCAACTTCGTCATCTCCATCTTGTTTCCCTCATCGGTTACTGTTACGAGAACACAGAGATGATACTCATTTATGATTTCATGGAACGCGGAACCCTCCGAGACCATCTCTACGGTTCTGATAATCAGTCCTTGTCGTGGAAGCAAAGGGTCCAGATTTGCATAGGTGCTGCAGGAGGGCTCCACTATCTGCATACCGGTGCAAAGCACGTCATCATTCACCGTGATGTGAAGAGTACCAATATTTTATTGGATGAAAAATGGATAGCCAAAGTTTCAGACTTCGGGTTATCCAGAATTGGGCCCACCAGTTCTTCAATGACCCATGTGAGCACCCAGGTGAAGGGCAGTGTTGGGTATTTAGACCCGGAGTATTATAAACGACAGCGTTTGTCGGAGAAATCTGACGTGTATTCTTTTGGGGTTGTGCTGTTGGAGGTATTGTGTGGGAGGCCGCCTTTGCTCCGTATGGCGGAGAGGCAACAGGTGTCTCTCGTTGATTGGGCAAAACATAGATATAAGGAGGGTTGTTTGGGTGAGATTGTGGATCCAGCACTGAAGGGTCAGATAACACCTCAGTGTTTGCAAAAATTTGGAGAGGTGGCGTTGACCTGTTTGCTGGAGGATGGTACTCAAAGGCCGTCCATGAACGTCATCGTTGGAATGCTGGAGCTTGTTCTGCAGCTTCAGGAGGATAGTGCTAAAAATGTAGTGATGATGGACACTGGTGGGGGTTATGAAGAAGATAGTGAGGACATGTTTAGCAGTAGTCATTACAGTGTAGAACTTACAGATTATAGTAATAGCAGTAGATGTAATACCTCAGCCAATACAGATGATAGCTATGGGAGTAAGCAATCTGACAGGTTGCTCTCTGAGAATGTTTTCTCTGAGATTAGGGATCCAAAGGGACGATAA 2610 0.4674 MDTTCTRTAVRSILFLFFMWCLSFLSTADDIYHPTELFSISCGSSTDFSTHDTRNWTSDIHFLSPINLSVSAPSLTQSTIQGPYTHARLSHSPFTYSFPLTQGPKFIRLFFYSTSYQNFPRSLSSFSVKAGPYTLLQDFNASLNADADDDPSHPDILFREYCINFQDGDKLNITFLPSTTYSYAFINGIEIVSMPPYLYYTDPDDSIGQPQLVGTMTPFVIENKFALETLYRLVASGIEIPSSGDTGMLRTWEPDIKYITTQSRVSVDYGKDEKLTFITTYNYTAPDQVYRTVRNMGLNGSINMGFNLTWQLPVDSGFIYMLRLHFCQLDPRVSSSGDLIFNIMIADQLASNRADVLMWTDNRKGVPVVKNYVVPIQGNLDKANLSVKLHPSPTSRIKDAVINAIEVFKINDSISSLAGQDPNPPPQKPKGPLSSNKKSSVVKKSREAIIGAVVGVLLLSSIVVFLLIKCKKNTAVDSGSSKKGGTSRGVDSSSLPTNLCRYFSIAEIRAATDNFNEQLVVGVGGFGNVYKGYIDEGSVPVAIKRLKPGSQQGMQEFMNEIEMLSQLRHLHLVSLIGYCYENTEMILIYDFMERGTLRDHLYGSDNQSLSWKQRVQICIGAAGGLHYLHTGAKHVIIHRDVKSTNILLDEKWIAKVSDFGLSRIGPTSSSMTHVSTQVKGSVGYLDPEYYKRQRLSEKSDVYSFGVVLLEVLCGRPPLLRMAERQQVSLVDWAKHRYKEGCLGEIVDPALKGQITPQCLQKFGEVALTCLLEDGTQRPSMNVIVGMLELVLQLQEDSAKNVVMMDTGGGYEEDSEDMFSSSHYSVELTDYSNSSRCNTSANTDDSYGSKQSDRLLSENVFSEIRDPKGR 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium913g00001 869 FunFam FERONIA receptor-like kinase 225 411 - -
Vium913g00001 869 FunFam FERONIA receptor-like kinase 37 195 - -
Vium913g00001 869 MobiDBLite consensus disorder prediction 830 857 - -
Vium913g00001 869 PANTHER OS03G0124300 PROTEIN-RELATED 14 474 IPR046957 GO:0004672
Vium913g00001 869 Pfam Malectin-like domain 40 410 IPR024788 -
Vium913g00001 869 ProSiteProfiles Protein kinase domain profile. 515 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium913g00001 869 CDD STKc_IRAK 530 788 - -
Vium913g00001 869 MobiDBLite consensus disorder prediction 830 869 - -
Vium913g00001 869 FunFam Receptor-like protein kinase FERONIA 487 591 - -
Vium913g00001 869 Gene3D Phosphorylase Kinase; domain 1 500 591 - -
Vium913g00001 869 Pfam Protein tyrosine and serine/threonine kinase 520 785 IPR001245 GO:0004672|GO:0006468
Vium913g00001 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Vium913g00001 869 Gene3D - 35 194 - -
Vium913g00001 869 Gene3D - 225 412 - -
Vium913g00001 869 ProSitePatterns Protein kinases ATP-binding region signature. 521 544 IPR017441 GO:0005524
Vium913g00001 869 SUPERFAMILY Protein kinase-like (PK-like) 492 789 IPR011009 -
Vium913g00001 869 SMART serkin_6 515 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium913g00001 869 Gene3D Transferase(Phosphotransferase) domain 1 592 808 - -
Vium913g00001 869 MobiDBLite consensus disorder prediction 417 438 - -
Vium913g00001 869 FunFam Receptor-like protein kinase FERONIA 592 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium913g00001 Vium-Chr913 14244 17056 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium913g00001 23 869 Receptor kinase-like Gene Family AT3G51550 45.759 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium913g00001 Malectin_like 1.1e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium913g00001 - - gmx:100305394 1176.39