Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium912g00022 ATGGGTCGGGAAACTGTGTTCCTTCCAGCCCCACCAACCACTACCACCACTATAGTGAATCCAGTGGCAGCACCAGCTGCACCACCTACCTCTCTTGCTCCTGGTTTCAGGTTTCACCCAACTGACGAGGAGCTTGTTATCTATTACCTCAAGCGCAAGGTTTCTGGTAAAAGCTTCCGATTTGATGCTATATCTGAAGTGGACATATACAGGAGCGAGCCCTGGGACCTAGCTGATAAATCAAGGTTGAAGACAAGGGACCAGGAGTGGTATTTCTTTAGTGCATTGGACAAGAAGTATGGAAATGGTGGAAGGATGAACAGGGCTACCAACAAAGGTTATTGGAAAGCCACTGGTAATGATCGGCCAGTGAAGCATGATCAAAGGACTGTGGGGTTGAAGAAAACTTTGGTGTTTCACAGTGGGCGAGCTCCTGATGGGAAGAGGACTAATTGGGTCATGCATGAGTACAGGCTTGTTGATGAGGAGTTAGAGAGGGCTGGGACTGGATCCTCTCAGCCTCAGGATGCGTATGTTTTGTGTAGAGTGTTTCACAAAAATAACATAGGACCTCCAAATGGGCAAAGATATGCACCCTTTGTTGAAGAAGAGTGGGATGATGCATCTGGAATGGTTCCAGGGGCAGACCCTGTGCATAATGGCTCTATCGCCCACCAGCCACGTGTTGAAGGCAACAATGGTGTTTTATTTGCTGAAGGGAGAAATGGTGTTCTACAGGACACTCAATCCATCAATAAAACTCCATTTGATGTGAACAAGCTTCCTATAGAAACTCAAAATCTTCTAGCTGTTTGCAAGAGAGAAAGCATGGCTGAGTATCCATCTCCTGAAAAGGATGATAATAATTGTAAGCAAGTGGATGAGTACCCTTCACCCCAAACAGACAATCCAAAACCCTTCTCTCTAATATACAAACGAAGGCGGCATAACTTGAACTCCAACCACTCTAATGTTTCTGGAGATTCAATCCGAACTGGTCAGGATCCATGCTCCTCTACAATAACTACTGCAGCAACAACACTCCCAACCACCACTGCTGGTGCTGACACCACCAACTCTGCACCAAAAAAGCATTTTCTGTCTGCACTGGTGGAATTTTCCCTGCAAGAGTCCCTTGAATCTAAGGAAAGTCTTGCTTTGATCAAGGCACCGGATTTTGATGCCGAAAACCTTGAGTCATCCATGTCTCCAAGCTCTGCCAAGTTCATCAAGAACTTGCAGAATGAGATCCATAAGCTTGCAGTCGAAAAGGAGACAATGAGGTTTGAGATGATGAGTGCTCAAGCGATGATTAACATTCTCCAGTCTCGTGTTGACGTTCTCAGCAAAGAAAATGAGGATTTGAAGAGAATGACCCAAAATCCTTAG 1389 0.4557 MGRETVFLPAPPTTTTTIVNPVAAPAAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATNKGYWKATGNDRPVKHDQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELERAGTGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWDDASGMVPGADPVHNGSIAHQPRVEGNNGVLFAEGRNGVLQDTQSINKTPFDVNKLPIETQNLLAVCKRESMAEYPSPEKDDNNCKQVDEYPSPQTDNPKPFSLIYKRRRHNLNSNHSNVSGDSIRTGQDPCSSTITTAATTLPTTTAGADTTNSAPKKHFLSALVEFSLQESLESKESLALIKAPDFDAENLESSMSPSSAKFIKNLQNEIHKLAVEKETMRFEMMSAQAMINILQSRVDVLSKENEDLKRMTQNP 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium912g00022 462 Gene3D NAC domain 41 189 IPR036093 GO:0003677|GO:0006355
Vium912g00022 462 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 31 324 - -
Vium912g00022 462 MobiDBLite consensus disorder prediction 279 307 - -
Vium912g00022 462 FunFam Nac domain-containing protein 86 41 189 - -
Vium912g00022 462 SUPERFAMILY NAC domain 26 187 IPR036093 GO:0003677|GO:0006355
Vium912g00022 462 Coils Coil 438 458 - -
Vium912g00022 462 Pfam No apical meristem (NAM) protein 34 159 IPR003441 GO:0003677|GO:0006355
Vium912g00022 462 ProSiteProfiles NAC domain profile. 32 186 IPR003441 GO:0003677|GO:0006355
Vium912g00022 462 Coils Coil 410 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium912g00022 Vium-Chr912 115461 126211 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium912g00022 1 457 NAC Transcription Factor Family AT3G10480 43.407 1.68e-117 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium912g00022 NAM 2.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium912g00022 - - gmx:100808783 766.918