Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium912g00020 ATGGCACCTATGGGTCCCGGCTTCCGATTCCACCCCACCGACGAAGAGCTGGTGGTGTTCTACCTGAAGCGCAAGATCACCGGAAACCTGTCCCGGTACGACCACATCGCAGTGGTTGATGTCTACAAGCTCGAGCCCTGGGACCTTCCCCCTCTGTCGAAGCTCAAGACCAAGGACTTGGAATGGTACTTCTTTAGCGTGCTGGACCGCAAGTATGGAAATGGCTCCAGGACCAACCGCGCCACCGAGAAGGGCTACTGGAAGACCACGGGAAAGGACCGCCCTGTGGCCCATGGCGACCGCACCGTGGGGATGAAGAAGACCCTCGTGTACCACATCGGTCGAGCCCCACATGGCCGTCGCACCAATTGGGTCATGCACGAGTACAAGATGCTCGATGAAGAATTGACTCGTGCTGGCACAGTGCTGGATGTGTATGTGGTATGTAGGATTTTCGAGAAGAGTGGTGCTGGACCAAAGAATGGGGCCAAGTATGGTGCTCCCTTGGACGAGAAGGAGTGGGATGTGGATGAGGAGAATGAGCAGAAGGAGGTGGTTGCCTTACCTGCGACTGCTCATCGTGTGGTGGTTCCCTTGACGGAGATTCGTCCTAACGTGGTTGCTCCTCCTTTGCCCGCGACAGCTGCCGTGGCTCCTCCTGTGGTAGCAACTGGTGGTGACTTTTGCGATGGTATTGGGGTGGCTCTTCCTTCGGTAGCAACTGGTACTGATTTTTGGGATGATATTGGGGCCTTTTTGGAAACTAACGACCTTGACGGGGTTGGATGA 789 0.5589 MAPMGPGFRFHPTDEELVVFYLKRKITGNLSRYDHIAVVDVYKLEPWDLPPLSKLKTKDLEWYFFSVLDRKYGNGSRTNRATEKGYWKTTGKDRPVAHGDRTVGMKKTLVYHIGRAPHGRRTNWVMHEYKMLDEELTRAGTVLDVYVVCRIFEKSGAGPKNGAKYGAPLDEKEWDVDEENEQKEVVALPATAHRVVVPLTEIRPNVVAPPLPATAAVAPPVVATGGDFCDGIGVALPSVATGTDFWDDIGAFLETNDLDGVG 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium912g00020 262 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
Vium912g00020 262 ProSiteProfiles NAC domain profile. 4 154 IPR003441 GO:0003677|GO:0006355
Vium912g00020 262 Gene3D NAC domain 13 157 IPR036093 GO:0003677|GO:0006355
Vium912g00020 262 FunFam Nac domain-containing protein 86 13 157 - -
Vium912g00020 262 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Vium912g00020 262 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium912g00020 Vium-Chr912 107810 109092 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium912g00020 4 177 NAC Transcription Factor Family AT5G04410 68.391 2.05e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium912g00020 NAM 1.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium912g00020 - - vum:124824018 518.079