Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium912g00017 ATGGCACCTATGGGTCCCGGCTTCCGATTCCACCCCACCGACGAAGAGCTGGTGGTGTTCTACCTGAAGCGCAAGATCACCGGAAACCTGTCCCGGTACGACCACATCGCAGTGGTTGATGTCTACAAGCTCGAGCCCTGGGACCTTCCCCCTCTGTCGAAGCTCAAGACCAAGGACTTGGAATGGTACTTCTTTAGCGTGCTGGACCGCAAGTATGGAAATGGCTCCAGGACCAACCGCGCCACCGAGAAGGGCTACTGGAAGACCACGGGAAAGGACCGCCCTGTGGCCCATGGCGACCGCACCGTGGGGATGAAGAAGACCCTCGTGTACCACATCGGTCGAGCCCCACATGGCCGTCGCACCAATTGGGTCATGCACGAGTACAAGATGCTCGATGAAGAATTGACTCGTGCTGGCACAGTGCTGGATGTGTATGTGGTATGTAGGATTTTCGAGAAGAGTGGTGCTGGACCAAAGAATGGGGCCAAGTATGGTGCTCCCTTGGACGAGAAGGAGTGGGATGTGGATGAGGAGAATGAGCAGAAGGAGGTGGTTGCCTTACCTGCGACTGCTCATCGTGTGGTGGTTCCCTTGACGGAGATTCGTCCTAACGTGGTTGCTCCTCCTTTGCCCGCGACAGCTGCCGTGGCTCCTCCTGTGGTAGCAACTGGTGGTGACTTTTGGGATGATATTGGGGCCTTTTTGGAAACTAACGACCTTGACGGGGAACTTGATTTGAGTGATATGATTGGGGGTGTTACTTTTCCATCACTAAACTTTCATCACGGGGAGTGTAGTACCTACGCTGAAAATTCCCAAGAACTCATCAAGGATCAGGAGCCATTGGCGGGCACCTTTGGAATTTCTGGGCCTGAAAATGGCCAGACTCTTGATATGTCTGAGCAACATGATATGGGCACAGGTTCAGTGAAAGATGAAGACATGGGTGAGCAGAGCGAAATTGTGAATCTTCTCAATTTCAATGATGCATCGGATAATATGGATCTGGATCTATATTTTGATGCCGCCCAGAATCTTCCAACGGCTGATGATGAATCATTCTTGGAAACCAATGATCTTGCAATTGGGAATGAGGATGATCTCATTGAGGCTGATCCTTCTGCGAATGATATTATGCTAGACAAGTATCTTCCACTCCCTGACGATGACGATGATGATATTTGGAAATATATATCGTTCGATTATTCTCAGGTTGCAGAGAGTGAAAACTCTAATTCCAACCAAGGATCACCTTTAACCCAGCAGGTTATGACCGACTCTATCTTTATAGTCATTTGCCTTGTAGGTATTATAGCTGTATATTGA 1329 0.4966 MAPMGPGFRFHPTDEELVVFYLKRKITGNLSRYDHIAVVDVYKLEPWDLPPLSKLKTKDLEWYFFSVLDRKYGNGSRTNRATEKGYWKTTGKDRPVAHGDRTVGMKKTLVYHIGRAPHGRRTNWVMHEYKMLDEELTRAGTVLDVYVVCRIFEKSGAGPKNGAKYGAPLDEKEWDVDEENEQKEVVALPATAHRVVVPLTEIRPNVVAPPLPATAAVAPPVVATGGDFWDDIGAFLETNDLDGELDLSDMIGGVTFPSLNFHHGECSTYAENSQELIKDQEPLAGTFGISGPENGQTLDMSEQHDMGTGSVKDEDMGEQSEIVNLLNFNDASDNMDLDLYFDAAQNLPTADDESFLETNDLAIGNEDDLIEADPSANDIMLDKYLPLPDDDDDDIWKYISFDYSQVAESENSNSNQGSPLTQQVMTDSIFIVICLVGIIAVY 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium912g00017 442 FunFam Nac domain-containing protein 86 13 157 - -
Vium912g00017 442 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Vium912g00017 442 ProSiteProfiles NAC domain profile. 4 154 IPR003441 GO:0003677|GO:0006355
Vium912g00017 442 Gene3D NAC domain 13 157 IPR036093 GO:0003677|GO:0006355
Vium912g00017 442 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 255 - -
Vium912g00017 442 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium912g00017 Vium-Chr912 97787 104750 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium912g00017 4 369 NAC Transcription Factor Family AT5G04410 41.538 9.02e-87 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium912g00017 NAM 3.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium912g00017 - - vum:124824029 860.907