Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium912g00016 ATGGCACCTATGGGTCCCGGCTTCCGATTCCACCCCACCGACGAAGAGCTGGTGGTGTTCTACCTGAAGCGCAAGATCACCGGAAACCTGTCCCGGTACGACCACATCGCAGTGGTTGATGTCTACAAGCTCGAGCCCTGGGACCTTCCCCCTCTGTCGAAGCTCAAGACCAAGGACTTGGAATGGTACTTCTTTAGCGTGCTGGACCGCAAGTATGGAAATGGCTCCAGGACCAACCGCGCCACCGAGAAGGGCTACTGGAAGACCACGGGAAAGGACCGCCCTGTGGCCCATGGCGACCGCACCGTGGGGATGAAGAAGACCCTCGTGTACCACATCGGTCGAGCCCCACATGGCCGTCGCACCAATTGGGTCATGCACGAGTACAAGATGCTCGATGAAGAATTGACTCGTGCTGGCACAGTGCTGGATGTGTATGTGGTATGTAGGATTTTCGAGAAGAGTGGTGCTGGACCAAAGAATGGGGCCAAGTATGGTGCTCCCTTGGACGAGAAGGAGTGGGATGTGGATGAGGAGAATGAGCAGAAGGAGGTGGTTGCCTTACCTGCGACTGCTCATCGTGTGGTGGTTCCCTTGACGGAGATTCGTCCTAACGTGGTTGCTCCTCCTTTGCCCGCGACAGCTGCCGTGGCTCCTCCTGTGGTAGCAACTGGTGGTGACTTTTGGGATGATATTGGGGCCTTTTTGGAAACTAACGACCTTGACGGGGAACTTGATTTGAGTGATATGATTGGGGGTGTTACTTTTCCATCACTAAACTTTCATCACGGGGAGTGTAGTACCTACGCTGAAAATTCCCAAGAACTCATCAAGGATCAGGAGCCATTGGCGGGCACCTTTGGAATTTCTGGGCCTGAAAATGGCCAGACTCTTGATATGCCTGAGCAACATGATATGGGCACAGGTTCAGTGAAAGATGAAGACAAGGGTGAGCAGAGCGAAATTGTGAATCTTCTCAATTTCAATGATGCATCGGATAATATGGATCTGGATCTATATTTTGATGCCGCCCAGAATCTTCCAACGGCTGATGATGAATCATTCTTGGAAACCAATGATCTTGCAATTGGGAATGAGGATGATCTCATTGAGGCTGATCCTTCTGCGAATGATATTATGCTAGACAAGTATCTTCCACTCCCTGACGATGACGATGATGATATTTGGAAATATATATCGTTCGATTATTCTCAGGTTGCAGAGAGTGAAAACTCTAATTCCAACCAAGGATCACCTTTAACCCAGCAGACTGTAGGGGGAGAAACAGCAAATAAAGCTGTGGTTGGTAAGCATGATTCTGAAGCACAAACTAGCAATGGGGCTTTTTTGGTGCAGAATACAGAGGAGGCAAAGTTAGCAGCACCAGGAAATACAAATCCATTTGTTAAGCAGGCCTATGGATGGTTAGCTAACATCCCTGCTTCACCTGCACATGCTTTTGAGTTTCCAGCAAAGGACATTACTCTTGGGATTGATGGTGCAGCTCAGCCTTCCCATCCAGCTCATATAACTACAGGTATGATCAGCATAACAGACATTACTTTTAGAGGCAATGCGATGGATTGGCCTATGGGCAAAATTGGAGGATTTAACACTGCAATGTCTACTGAGTTTTCTCAACCGGACGTTAATTGTGCTGCCTTGATACCTGTTTCTGGCAAGACCGCATTTGTATTGTCACATGGCTGGATATTTTTGACGGGTTTCTCAGTTCTTATTCTTTCACTTAGTTTCAAGATTGGAAGCATCATGTATACTGGTAAGTAA 1788 0.4821 MAPMGPGFRFHPTDEELVVFYLKRKITGNLSRYDHIAVVDVYKLEPWDLPPLSKLKTKDLEWYFFSVLDRKYGNGSRTNRATEKGYWKTTGKDRPVAHGDRTVGMKKTLVYHIGRAPHGRRTNWVMHEYKMLDEELTRAGTVLDVYVVCRIFEKSGAGPKNGAKYGAPLDEKEWDVDEENEQKEVVALPATAHRVVVPLTEIRPNVVAPPLPATAAVAPPVVATGGDFWDDIGAFLETNDLDGELDLSDMIGGVTFPSLNFHHGECSTYAENSQELIKDQEPLAGTFGISGPENGQTLDMPEQHDMGTGSVKDEDKGEQSEIVNLLNFNDASDNMDLDLYFDAAQNLPTADDESFLETNDLAIGNEDDLIEADPSANDIMLDKYLPLPDDDDDDIWKYISFDYSQVAESENSNSNQGSPLTQQTVGGETANKAVVGKHDSEAQTSNGAFLVQNTEEAKLAAPGNTNPFVKQAYGWLANIPASPAHAFEFPAKDITLGIDGAAQPSHPAHITTGMISITDITFRGNAMDWPMGKIGGFNTAMSTEFSQPDVNCAALIPVSGKTAFVLSHGWIFLTGFSVLILSLSFKIGSIMYTGK 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium912g00016 595 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 255 - -
Vium912g00016 595 Gene3D NAC domain 13 157 IPR036093 GO:0003677|GO:0006355
Vium912g00016 595 MobiDBLite consensus disorder prediction 294 318 - -
Vium912g00016 595 ProSiteProfiles NAC domain profile. 4 154 IPR003441 GO:0003677|GO:0006355
Vium912g00016 595 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
Vium912g00016 595 FunFam Nac domain-containing protein 86 13 157 - -
Vium912g00016 595 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium912g00016 Vium-Chr912 96700 100235 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium912g00016 4 591 NAC Transcription Factor Family AT5G04410 36.098 2.31e-103 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium912g00016 NAM 6.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium912g00016 - - vun:114191703 1060.44