Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium912g00008 ATGGCTTTTCCAATTCTCTTCCTTCTCTTCCTCTCCCTCCCATTCTCCTATGCAAAACTCAACGTTGATTACTACAAAGAAACATGTCCAGACTTTTCAAAAATCGTAATGGAAAACATCTACACCAAACAAAGTACAAGCCCCGCCACAGCACCCGGTATTCTTCGTCTCTTCTTCCATGACTGCATAACCGACGGCTGCGACGCCTCCATCCTCGTCTCTTCCAACGCCTACAACCCCCATGCAGAGCGTGATGCCGACCTCAACCTCTCTCTCTCCGGCGATGCCTTCGACGTCATAGTCAAGATCAAGAACGCGCTCGAGCTTGCATGCCCTGGCATAGTTTCGTGTTCTGACATCGTGGCACAGGCCACGAGAGACCTCGTTAAGATGGTGGGTGGACCCTACTATCCCGTGAGGTTGGGGAGAAAAGACAGCTTGGAATCTGACGCTGCAAAAGTGGTTGAAAACCTTCCCACTCCCAACATGACCATGGACCAGATCATTGAGAAGTTCACCAAGAAGGGTTTCACGGTGAAAGAGATGGTGGCCATGACCGGCGCACACACCATAGGGTTCACTCACTGCAAGGAGTTCATCGGCAGGATCTACAACTTCAGCAAAACCTCCGATGCCGATCCCACCATGCACCCTAAACTGGTCGAAGGGTTGAGGTCAGTGTGCCATAACTACACCAGTGACCCTTCCATGGCTGCATTCAATGATATGAGGACACCAGGGAGGTTCGACAATGCTTATTTCCAGAATGTGATGAATGGATTGGGGCTCTTGACCTCTGACTCCTTGCTCGGTGTGGACCCTAGAACCAAGCCATATGTGGAACTGTACGCAAAAGATCAGCAAGCTTTCTTCAACGACTTTGTAAAAGCAATGGAGAAGCTTTCTGTCTTTCAAGTGAAAACTGGCAAGCAAGGAGAAGTCAGGTCCAGGTGCGACCAGTTCAACAGCATTAGTCGCGCCTAA 984 0.5 MAFPILFLLFLSLPFSYAKLNVDYYKETCPDFSKIVMENIYTKQSTSPATAPGILRLFFHDCITDGCDASILVSSNAYNPHAERDADLNLSLSGDAFDVIVKIKNALELACPGIVSCSDIVAQATRDLVKMVGGPYYPVRLGRKDSLESDAAKVVENLPTPNMTMDQIIEKFTKKGFTVKEMVAMTGAHTIGFTHCKEFIGRIYNFSKTSDADPTMHPKLVEGLRSVCHNYTSDPSMAAFNDMRTPGRFDNAYFQNVMNGLGLLTSDSLLGVDPRTKPYVELYAKDQQAFFNDFVKAMEKLSVFQVKTGKQGEVRSRCDQFNSISRA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium912g00008 327 FunFam Peroxidase 159 301 - -
Vium912g00008 327 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 PRINTS Plant peroxidase signature 53 73 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 PRINTS Plant peroxidase signature 29 48 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 Gene3D - 23 322 - -
Vium912g00008 327 ProSiteProfiles Plant heme peroxidase family profile. 19 322 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 PANTHER - 4 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 FunFam Peroxidase 23 172 - -
Vium912g00008 327 SUPERFAMILY Heme-dependent peroxidases 20 322 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 CDD secretory_peroxidase 19 321 IPR033905 GO:0004601|GO:0042744
Vium912g00008 327 Gene3D Peroxidase, domain 2 159 301 - -
Vium912g00008 327 Pfam Peroxidase 46 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 PRINTS Haem peroxidase superfamily signature 51 65 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium912g00008 327 ProSitePatterns Peroxidases active site signature. 51 62 IPR019794 GO:0004601
Vium912g00008 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium912g00008 Vium-Chr912 50667 52077 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium912g00008 3 325 Peroxidase AT5G47000 56.442 1.01e-132 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium912g00008 K00430 - gmx:100795676 555.058