Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9124g00002 ATGCCTGGTTTATCAGGCATTGGTCTTCTGTACAAGATTATGGGCCACAAAACTCGGAAAAATATTCCAGTAGTTATGATGTCATCTCTTGATTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCCGTTGACTTTCTAGTCAAACCCATTCGAAAGAATGAGCTCAAAAACCTGTGGCAGCACGTTTGGAGAAGATGTCACAGTTCTAGCGGGAGTGGCAGTGAAAGTGGAACGCAAACACAGAAGTCTGTTAAATCAAAGAGTCTTGAGAAGTCTGAGAATAATTCTGGGAGCAACGATGAAGATGATAATGGAAGTGTAGGCCTGAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGCTCATGGACCAAACGTGCTGTAGAAGTTGATAGTCCCAAACCTGTCTCTCAGTGGGATCAAATAGCTGAGTGCCCTGACAGTACTTGTGCTCAAGTTGTTCACTCCAATGCTGAACTCGGTGGGAACAAGGAGGCTTCCCTAGGTGCAAAGGAGTGTTCAGAACAGAAGGAACAACTTGTCAAAACTGCAGGTTCTAAACATAGCAATGCACCTGATGCCGGCCCCTCTAAATCACTGGACCTTAATTGTGAAAATCAATCAATCAAGCTAAGGTGCAAAGGTTTATCATTGTCTGAAGCCATTACTAGCAGTTCTGATTATCAGATGCATAGTGGAGAATTTGAAGCCTTAAATAAAAGGCTGAAGTCCTCAGATAGTGAAAATAAAGGTACTAATAATGATGAAGAATTGCCATCTCTTGACCTTAGTTTAAAGAGGCCTAGAGGAGTTAAAGATACTGGTATTATAATTCAGGATGATAGGAATGTCTTAAGACGTTCTGATCAGTCTGCTTTCTCAAGGTACAATGCAGCCTCTAACGCTAAGAAATCTCCCACTGGATGTGTTGGAAGCAATTCTCCCTATAATAATAGCTTAGAAGTTACAAAGAAAGATTCATCTCATGATATTCAATCTCATTCAAGCGGCAATCTTCCTAACCAAAATTCAAATGGTGCTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCTTATGCTAAATCTGCAGTTATAAGTGAGCTAGCAGTGGCTTCAACCAAATGTTTGTACCCAACATCCGCTTTCCAGCCTATAAAAAACAACCTTGTCTGTAAATCTCAACAAGTCATCTTACATAACACTGAAGATAAAGCAGCAACAATGCTGGCATTACCTAAAGTAGACAGACATAGAGATTCTGCTGCTCCAGACTTCCATCTCCATTATGAAAACAATAACTGTACTGATGACATGCACCAGCTGCCACCTGATCATGATGCTGAATCTGCAAAGAAATTGGCTACTGCTGCTACTCCACATTGTGGTTCATCAAATGTGGTAGAAGTGCTAGTTGAAAGTAATGTTGGAAACCTCAGTATCAATAGAAGTGTTTCAGGAAGCAACAATGGAAGCAATGGCCAAAATGGGGGCAGCACAGCAGTTAATGCTGGAGGAACAAACATGGAAAGCAACAATGGACTCCCTGGGAATAGTGGCAGTGGAGATGCTAGTGGAAGTAGAAGTGCCAACAGAGTAGATCAAAACAAGACTTCTCAAAGGGAAGCAGCCTTAACTAAATTTCGCCAAAAGAGAAAAGAAAGAAAGGAGAGGTGCTTTCATAAAAAGGTAACAGTCCATAGAGTACATAAGTAA 1731 0.4102 MPGLSGIGLLYKIMGHKTRKNIPVVMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKSENNSGSNDEDDNGSVGLNNGDGSDNGSGTQSSWTKRAVEVDSPKPVSQWDQIAECPDSTCAQVVHSNAELGGNKEASLGAKECSEQKEQLVKTAGSKHSNAPDAGPSKSLDLNCENQSIKLRCKGLSLSEAITSSSDYQMHSGEFEALNKRLKSSDSENKGTNNDEELPSLDLSLKRPRGVKDTGIIIQDDRNVLRRSDQSAFSRYNAASNAKKSPTGCVGSNSPYNNSLEVTKKDSSHDIQSHSSGNLPNQNSNGASNNIDMGSTTNNAYAKSAVISELAVASTKCLYPTSAFQPIKNNLVCKSQQVILHNTEDKAATMLALPKVDRHRDSAAPDFHLHYENNNCTDDMHQLPPDHDAESAKKLATAATPHCGSSNVVEVLVESNVGNLSINRSVSGSNNGSNGQNGGSTAVNAGGTNMESNNGLPGNSGSGDASGSRSANRVDQNKTSQREAALTKFRQKRKERKERCFHKKVTVHRVHK 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9124g00002 576 Gene3D - 1 105 - -
Vium9124g00002 576 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 244 IPR045279 GO:0009736
Vium9124g00002 576 MobiDBLite consensus disorder prediction 186 205 - -
Vium9124g00002 576 MobiDBLite consensus disorder prediction 70 87 - -
Vium9124g00002 576 Pfam Response regulator receiver domain 1 59 IPR001789 GO:0000160
Vium9124g00002 576 MobiDBLite consensus disorder prediction 300 356 - -
Vium9124g00002 576 MobiDBLite consensus disorder prediction 246 270 - -
Vium9124g00002 576 MobiDBLite consensus disorder prediction 300 326 - -
Vium9124g00002 576 MobiDBLite consensus disorder prediction 488 576 - -
Vium9124g00002 576 MobiDBLite consensus disorder prediction 556 576 - -
Vium9124g00002 576 MobiDBLite consensus disorder prediction 70 142 - -
Vium9124g00002 576 ProSiteProfiles Response regulatory domain profile. 1 65 IPR001789 GO:0000160
Vium9124g00002 576 SUPERFAMILY CheY-like 1 70 IPR011006 -
Vium9124g00002 576 MobiDBLite consensus disorder prediction 101 131 - -
Vium9124g00002 576 MobiDBLite consensus disorder prediction 336 356 - -
Vium9124g00002 576 MobiDBLite consensus disorder prediction 488 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9124g00002 Vium-Chr9124 2113 12496 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9124g00002 22 569 Response Regulator Gene Family AT5G02810 46.823 6.42e-97 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium9124g00002 Response_reg 1.5e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9124g00002 K12129 - gmx:100796933 870.922