Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9124g00001 ATGCCTGGTTTATCAGGCATTGGTCTTCTGTACAAGATTATGGGCCACAAAACTCGGAAAAATATTCCAGTAGTTATGATGTCATCTCTTGATTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCCGTTGACTTTCTAGTCAAACCCATTCGAAAGAATGAGCTCAAAAACCTGTGGCAGCACGTTTGGAGAAGATGTCACAGTTCTAGCGGGAGTGGCAGTGAAAGTGGAACGCAAACACAGAAGTCTGTTAAATCAAAGAGTCTTGAGAAGTCTGAGAATAATTCTGGGAGCAACGATGAAGATGATAATGGAAGTGTAGGCCTGAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGCTCATGGACCAAACGTGCTGTAGAAGTTGATAGTCCCAAACCTGTCTCTCAGTGGGATCAAATAGCTGAGTGCCCTGACAGTACTTGTGCTCAAGTTGTTCACTCCAATGCTGAACTCGGTGGGAACAAGGAGGCTTCCCTAGGTGCAAAGGAGTGTTCAGAACAGAAGGAACAACTTGGTTCTAAACATAGCAATGCACCTGATGCCGGCCCCTCTAAATCACTGGACCTTAATTGTGAAAATCAATCAATCAAGCTAAGGTGCAAAGGTTTATCATTGTCTGAAGCCATTACTAGCAGTTCTGATTATCAGATGCATAGTGGAGAATTTGAAGCCTTAAATAAAAGGCTGAAGTCCTCAGATAGTGAAAATAAAGGTACTAATAATGATGAAGAATTGCCATCTCTTGACCTTAGTTTAAAGAGGCCTAGAGGAGTTAAAGATACTGGTATTATAATTCAGGATGATAGGAATGTCTTAAGACGTTCTGATCAGTCTGCTTTCTCAAGGTACAATGCAGCCTCTAACGCTAAGAAATCTCCCACTGGATGTGTTGGAAGCAATTCTCCCTATAATAATAGCTTAGAAGTTACAAAGAAAGATTCATCTCATGATATTCAATCTCATTCAAGCGGCAATCTTCCTAACCAAAATTCAAATGGTGCTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCTTATGCTAAATCTGCAGTTATAAGTGAGCTAGCAGTGGCTTCAACCAAATGTTTGTACCCAACATCCGCTTTCCAGCCTATAAAAAACAACCTTGTCTGTAAATCTCAACAAGTCATCTTACATAACACTGAAGATAAAGCAGCAACAATGCTGGCATTACCTAAAGTAGACAGACATAGAGATTCTGCTGCTCCAGACTTCCATCTCCATTATGAAAACAATAACTGTACTGATGACATGCACCAGCTGCCACCTGATCATGATGCTGAATCTGCAAAGAAATTGGCTACTGCTGCTACTCCACATTGTGGTTCATCAAATGTGGTAGAAGTGCTAGTTGAAAGTAATGTTGGAAACCTCAGTATCAATAGAAGTGTTTCAGGAAGCAACAATGGAAGCAATGGCCAAAATGGGGGCAGCACAGCAGTTAATGCTGGAGGAACAAACATGGAAAGCAACAATGGACTCCCTGGGAATAGTGGCAGTGGAGATGCTAGTGGAAGTAGAAGTGCCAACAGAGTAGATCAAAACAAGACTTCTCAAAGGGAAGCAGCCTTAACTAAATTTCGCCAAAAGAGAAAAGAAAGAAAGGAGAGGTGCTTTCATAAAAAGGTAACAGTCCATAGAGTACATAAGTAA 1719 0.4101 MPGLSGIGLLYKIMGHKTRKNIPVVMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKSENNSGSNDEDDNGSVGLNNGDGSDNGSGTQSSWTKRAVEVDSPKPVSQWDQIAECPDSTCAQVVHSNAELGGNKEASLGAKECSEQKEQLGSKHSNAPDAGPSKSLDLNCENQSIKLRCKGLSLSEAITSSSDYQMHSGEFEALNKRLKSSDSENKGTNNDEELPSLDLSLKRPRGVKDTGIIIQDDRNVLRRSDQSAFSRYNAASNAKKSPTGCVGSNSPYNNSLEVTKKDSSHDIQSHSSGNLPNQNSNGASNNIDMGSTTNNAYAKSAVISELAVASTKCLYPTSAFQPIKNNLVCKSQQVILHNTEDKAATMLALPKVDRHRDSAAPDFHLHYENNNCTDDMHQLPPDHDAESAKKLATAATPHCGSSNVVEVLVESNVGNLSINRSVSGSNNGSNGQNGGSTAVNAGGTNMESNNGLPGNSGSGDASGSRSANRVDQNKTSQREAALTKFRQKRKERKERCFHKKVTVHRVHK 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9124g00001 572 MobiDBLite consensus disorder prediction 70 87 - -
Vium9124g00001 572 MobiDBLite consensus disorder prediction 171 200 - -
Vium9124g00001 572 Pfam Response regulator receiver domain 1 59 IPR001789 GO:0000160
Vium9124g00001 572 MobiDBLite consensus disorder prediction 296 352 - -
Vium9124g00001 572 MobiDBLite consensus disorder prediction 242 266 - -
Vium9124g00001 572 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 238 IPR045279 GO:0009736
Vium9124g00001 572 MobiDBLite consensus disorder prediction 484 572 - -
Vium9124g00001 572 MobiDBLite consensus disorder prediction 552 572 - -
Vium9124g00001 572 MobiDBLite consensus disorder prediction 70 142 - -
Vium9124g00001 572 MobiDBLite consensus disorder prediction 296 322 - -
Vium9124g00001 572 ProSiteProfiles Response regulatory domain profile. 1 65 IPR001789 GO:0000160
Vium9124g00001 572 SUPERFAMILY CheY-like 1 70 IPR011006 -
Vium9124g00001 572 Gene3D - 1 104 - -
Vium9124g00001 572 MobiDBLite consensus disorder prediction 101 131 - -
Vium9124g00001 572 MobiDBLite consensus disorder prediction 332 352 - -
Vium9124g00001 572 MobiDBLite consensus disorder prediction 484 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9124g00001 Vium-Chr9124 2106 12496 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9124g00001 22 565 Response Regulator Gene Family AT5G02810 45.439 1.55e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium9124g00001 Response_reg 1.5e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9124g00001 K12129 - gmx:100796933 858.211