Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9122g00007 ATGACCAAACCCAACACGTTCTTTCACAATCTCATCAAGCCCTTCAAATTCAGTTCCAGTAAAGAGGAACATAGCGGAGACGATATACAAAACTTAGCTGCACAGGAGAATAAGGTCTTCTCTTACGAAACATTGGTCGCTGCTACAAACAAATTTAGCATTCTTAACAAGCTTGGTGAAGGGGGATTTGGACCCGTCTTTAAGGGGAAATTGAGTGACGGGAGAGAGATTGCAGTCAAAAGGTTATCGCGTAGATCGAATCAAGGGAAGACGCAGTTCATCAACGAGGCCAAGTTGTTGGGTCGTGTGCAGCACCGAAATGTGGTGAATCTGATCGGTTACTGCACCCATGCCTCCGAGAAGCTTCTTGTTTATGAGTATGTCCCTCACAAGAGCCTTGACAAGTTTCTCTTCAAAACGGGGAAGAAAGAAGAGCTAAACTGGAAACGTAGATTTGACATCATCAATGGGGTGGGAAGGGGTCTGCTTTATCTTCACGAAGACTCTCACAACTGCATAATCCATCGCGACATAAAGGCCAGTAACATCTTACTTGATGAAAAATGGGGTCCTAAGATAGCAGACTTTGGTCTCGCCAGACTCTTCCCCGAAGACCAAACCCACGTCAACACCCGTGTGGCTGGAACCAACGGGTATTTGGCACCAGAATATTTAATGTATGGCCATTTATCTGTGAAGGCAGACGTATTCAGCTATGGAGTTTTGTTGTTGGAATTGGTCACTGGCCGGAGAAATTCGTCGTTTGATGCCAACTCCAGTGCGCAGAATCTCCTCGACTGGGCATACTGGCTATACAAGAAGGGGAGGGCTTTGGAAATGGTGGACCCTGCATTGGGGTCTTCAGTGATAACTGAAGAAGTAGAAATGTGCATTAAACTGGGTCTGTTGTGCACTCAAGGTGATCCAAACCTTCGTCCAACCATGGGACGTGTGGTGGTGATGCTGTCAAAGAAACCGAACCACATGGAAGAACCAACAAGACCAGGAATGGCTGGTTCCAGATTCAGAAGAGTGTCTCACAGACCCTCTGCAATGTTTTCTTCTGGGGTTGATGATGACTCTCATTCACACACTGACACTGGTGATTCAAGCAACTATGCCACTAATAATAATACTACTTCTGTAACATCAACAACACCAAGCTCCAGTGCAACTGCAGAAGTAGACCCCCGAGGGAAACGACCGATGCAAGGTTAG 1218 0.4631 MTKPNTFFHNLIKPFKFSSSKEEHSGDDIQNLAAQENKVFSYETLVAATNKFSILNKLGEGGFGPVFKGKLSDGREIAVKRLSRRSNQGKTQFINEAKLLGRVQHRNVVNLIGYCTHASEKLLVYEYVPHKSLDKFLFKTGKKEELNWKRRFDIINGVGRGLLYLHEDSHNCIIHRDIKASNILLDEKWGPKIADFGLARLFPEDQTHVNTRVAGTNGYLAPEYLMYGHLSVKADVFSYGVLLLELVTGRRNSSFDANSSAQNLLDWAYWLYKKGRALEMVDPALGSSVITEEVEMCIKLGLLCTQGDPNLRPTMGRVVVMLSKKPNHMEEPTRPGMAGSRFRRVSHRPSAMFSSGVDDDSHSHTDTGDSSNYATNNNTTSVTSTTPSSSATAEVDPRGKRPMQG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9122g00007 405 MobiDBLite consensus disorder prediction 367 393 - -
Vium9122g00007 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Vium9122g00007 405 SUPERFAMILY Protein kinase-like (PK-like) 37 339 IPR011009 -
Vium9122g00007 405 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Vium9122g00007 405 MobiDBLite consensus disorder prediction 351 405 - -
Vium9122g00007 405 ProSiteProfiles Protein kinase domain profile. 52 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9122g00007 405 CDD STKc_IRAK 58 324 - -
Vium9122g00007 405 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 20 383 - -
Vium9122g00007 405 Pfam Protein kinase domain 53 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9122g00007 405 SMART serkin_6 52 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9122g00007 405 Gene3D Phosphorylase Kinase; domain 1 15 127 - -
Vium9122g00007 405 FunFam Cysteine-rich receptor-like protein kinase 2 128 330 - -
Vium9122g00007 405 Gene3D Transferase(Phosphotransferase) domain 1 128 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9122g00007 Vium-Chr9122 71156 76222 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9122g00007 40 340 Receptor kinase-like Gene Family AT4G11530 52.475 1.40e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium9122g00007 Pkinase 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9122g00007 - - gmx:100811523 622.468