Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9122g00004 ATGTTGGCCTCCACACTTCTACCTCCCTCCAAGCTCCACCCTTCGCATCTCGTCCCTCCCATCACCGTCGCAGAAGCTCCTTTGAGAAACAGAGTCGCAATCTTTTCCAAATCCACCCGCAAACTCGCTTTCGTTGCCAGGGCCACCAATGACGCCCGTGACGGCACCGTTGACGCAACCTCTTCGCCGGGTTTTGATGCAGTAACAAGTACATCTTCTGGCCTTGGTGATGGTTATGTGGCTTTGTTTGTTCGTATGTTAGGCCTTGATCGTGATCCTCTGGATAGAGAACAAGCTATAATTGCTCTCTGGAAGTATTCACTCGGTGGAAAGAAGTGTATAGACACTATAATGCAGTTTCCTGGTTGTATTAATCTTGTTGTGAACCTCCTCAGATTAGAGTCTACGTCAGCATGCGAGGCAGCTGCAGGCCTTCTGCGATCATTGTCTTCAGTCAATCTGTATAGAAATTTTGTAGCTGAAAGTGGAGCGATAGAAGAGATAAATAGATTGCTGAGACAATCTTCCTTGACTCCTGAGGTAAAGGAGCAGAGTTTGACTACACTCTGGAATTTATCTGTTGATGAGAAGCTCTGGATTAAAATTTCAAAGACTGAGATCCTTCCTGTAGCTATTAAGTACCTTGAAGATTATGACATTAAAGTGAAGGAGGCTGCAGGGGGAATTTTGGCAAATTTAGCACTGAGTCGTGTTAACCACAGCATCATGGTTGAAGCGGGTGTTATACCAAAATTGGCAAAGTTCTTAAAATCTATGGAAGGATCAAAAGTTCTTAGGAAGGAAGCAAGGAATGCATTGTTAGAACTTTTTAAGGACAATGATTATAAAATTCTTGTTATGGAGGAAGGTCTGGTTCCTGTCCCATTAATTGGTGCTGCAGCCTTTAAGTCATTTACCCCAGCACATTTGAGGCTCACATTACCTGATGGTACAGAAATTGAAAGGACTTCTAGACCGCCATCGCGATTTGGTGCTTCGGAATTACTTCTTGGATTAAATATTGATGACAAGAATGCTAACTTAGAGGAAGCAAAGGTCAGTGCAATTATTGGCCGAAGCCAACAACAATTCCTTGCTCGTGTTGGAGCCTTAGAAATGGAAGAAAAAACTATACCGAATTCTGATTGCTCAAATGATCAGAGGTTTACACTTTTACCTTGGATGGATGGTGTTGCTCGTTTAGCACTGATATTAGAACTGGAAGATAAGTCTGCATCAATAAAGGCTGCAAAATCAATTGCCACTTCATGTATCAATGAACATATGCGTATTGCATTCAGGGAGGCTGGAGTAATTAAGCATTTAATAAGGCTTTTGAACTGTGACGACGATGCAGTCCAGTTGACAGTAACACAAGCTTTGGAAAGGCTGTCTGTTAGCGATATTGTTTGCCAGGTAATTGAAGCTGAAGGGGTTTTAGGTCCTTTAGTTAGTATTTTGAAATGCTCGGGGACAGTGGGAACTATTGTGGAAAAGTCATTGAGTATACTAGCAAGGATATTTGACCTCAGTAAACAAAAGCAACTGGAGTTAATGGATTTGAGAAAGCATTTGGTGGAGCAAAAAATGACTGTTTCAACCAGGAATAATATACTGGATTCTGTTTTCATTGCACACCTTGTTGAGATTCTGAAGTCCTCTCCTCCCAATTTACAAGGAAAAGCTGCTTCTGTGCTTGAATTTGTGGCATTGAGTGACCCAACTCTAGCTCCAATTTGTTTTTTGGATATCGAATGTGGTCTCAGTTCTGCTTTTCAACAAAAGATTTTGAAAATTTCAGGGGACATGGAATCTGATGCAGAAGATCAATTTTATGAAGCATATGCAATTGAATTTGAAGAAGCTGGTCTGGCAATATCTGCAGCATCACGATTTCTGACTATACTACTCGATTGCGAGCAGTTCCGCAACCAAATAAATGCCTCCTACTTCATTGATATGCTTCGCGAAATCCTCAAGTCCAATATTCCTCTCCGCAGCAAAGAGTCGGTAGCTGCATGCCTACTTAAACTGAGTTCTTTCTCTGCCTCCATCACCAGTGTCTATCCAATCAACGTGGAAGTTACACTTTACGAGACAATCCCAAGACTTCTAGAACAGATCAAAACTTCATTCTCCCCAGAAGCACAAGAAACTGCTGTTGTAGAACTTAATAGAATAATATCTGAAGGAGTGGTAGATTCCACAGACGAAGCTATTATTTCAGAGGGGGCAATACGTTCATTGGTGATGCTGATTGAAGAAGGTAGTGAAAGGGCTGTTGACGCAAGCTTGGCAATACTGCACAATCTGAGTAAGAACAATGAGAACCACTCAGCACTGGTGACTGCTGGAGCCGTGCAGGTGTTAAAAAGAATTGTTCTTGCAAACAGACCACACTGGGAACGGGCACTTCTTTTACTCAGGATTTTGCAACCTTGA 2442 0.421 MLASTLLPPSKLHPSHLVPPITVAEAPLRNRVAIFSKSTRKLAFVARATNDARDGTVDATSSPGFDAVTSTSSGLGDGYVALFVRMLGLDRDPLDREQAIIALWKYSLGGKKCIDTIMQFPGCINLVVNLLRLESTSACEAAAGLLRSLSSVNLYRNFVAESGAIEEINRLLRQSSLTPEVKEQSLTTLWNLSVDEKLWIKISKTEILPVAIKYLEDYDIKVKEAAGGILANLALSRVNHSIMVEAGVIPKLAKFLKSMEGSKVLRKEARNALLELFKDNDYKILVMEEGLVPVPLIGAAAFKSFTPAHLRLTLPDGTEIERTSRPPSRFGASELLLGLNIDDKNANLEEAKVSAIIGRSQQQFLARVGALEMEEKTIPNSDCSNDQRFTLLPWMDGVARLALILELEDKSASIKAAKSIATSCINEHMRIAFREAGVIKHLIRLLNCDDDAVQLTVTQALERLSVSDIVCQVIEAEGVLGPLVSILKCSGTVGTIVEKSLSILARIFDLSKQKQLELMDLRKHLVEQKMTVSTRNNILDSVFIAHLVEILKSSPPNLQGKAASVLEFVALSDPTLAPICFLDIECGLSSAFQQKILKISGDMESDAEDQFYEAYAIEFEEAGLAISAASRFLTILLDCEQFRNQINASYFIDMLREILKSNIPLRSKESVAACLLKLSSFSASITSVYPINVEVTLYETIPRLLEQIKTSFSPEAQETAVVELNRIISEGVVDSTDEAIISEGAIRSLVMLIEEGSERAVDASLAILHNLSKNNENHSALVTAGAVQVLKRIVLANRPHWERALLLLRILQP 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9122g00004 813 SMART arm_5 733 773 IPR000225 GO:0005515
Vium9122g00004 813 SMART arm_5 110 151 IPR000225 GO:0005515
Vium9122g00004 813 SMART arm_5 236 278 IPR000225 GO:0005515
Vium9122g00004 813 SMART arm_5 426 466 IPR000225 GO:0005515
Vium9122g00004 813 SMART arm_5 152 194 IPR000225 GO:0005515
Vium9122g00004 813 SUPERFAMILY ARM repeat 628 800 IPR016024 -
Vium9122g00004 813 Gene3D - 602 812 IPR011989 -
Vium9122g00004 813 SUPERFAMILY ARM repeat 77 574 IPR016024 -
Vium9122g00004 813 Gene3D - 382 580 IPR011989 -
Vium9122g00004 813 Gene3D - 76 303 IPR011989 -
Vium9122g00004 813 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 46 812 - -
Vium9122g00004 813 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 744 786 IPR000225 GO:0005515
Vium9122g00004 813 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 163 196 IPR000225 GO:0005515
Vium9122g00004 813 Pfam Armadillo/beta-catenin-like repeat 426 465 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9122g00004 122 298 U-box Gene Family AT5G67340 32.632 8.02e-07 50.8