Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9112g00006 ATGGATGAATACCACTGTAATGCATACCCAATGCTTTCTATCTCTGCGTCAGAACGTCTACCTTTTCCCCATGATCACCAACACTTCGATGTAGATTTTCAGTACTCAAACATGCACGATTTGAATGGAAGCAAATCAGAAGCCTTTGGCAACGTTTTACTCCACAAATTTCAAAACATTTCGAAGAATGAAATGTTGAAAGAAACAACCATCGTGTACTGTCTTTCCCGCATGGGTTTGCCTCAAAATGCTCACGGTGTCGTGGTCGCAGAAGTGTTACGGTGTGTACGTGACATGATTCGTGACACAGCTCACCGACATAGACTTGTTCTTTGTATGCGTGTGGAAATCGGCATTACTCGTGCAAACCAAGATGGAATAAGTGTCAGTGCAAACCAAGATGGAATAAATGTCAGTGCAAATCAAGATGGAACAAGTGTCAGTGCAAACCAAGATGGAATAAGTGTCAGTGCAAACCAAGATGAAATAAGTGCCAGTGTTATCGACAACGTTAGCGATGATGATCATTTTGAGGAAGCTGAGGAATATGGATTCGAAGAAGACGATGAAGATTATGGATTAGTGCCTGCAGACAAGGCATTTGTTGAAGGTTTGGAGATGGTTCAACAAAAGGGTTCGGAAAGGTGCGCCATTTGTTTCGAGGATTTTCTTTTTGGTGTTCGTATGCCTTGCTTGCATGCGTTTCACAAAAGCTGCATCACTGAGTGGTTGCAAATAGGAAATTCTTGCCCTTTGTGTCGCATTAATTTGCCTACTCAAAGTGATTGA 789 0.4208 MDEYHCNAYPMLSISASERLPFPHDHQHFDVDFQYSNMHDLNGSKSEAFGNVLLHKFQNISKNEMLKETTIVYCLSRMGLPQNAHGVVVAEVLRCVRDMIRDTAHRHRLVLCMRVEIGITRANQDGISVSANQDGINVSANQDGTSVSANQDGISVSANQDEISASVIDNVSDDDHFEEAEEYGFEEDDEDYGLVPADKAFVEGLEMVQQKGSERCAICFEDFLFGVRMPCLHAFHKSCITEWLQIGNSCPLCRINLPTQSD 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9112g00006 262 ProSiteProfiles Zinc finger RING-type profile. 216 254 IPR001841 -
Vium9112g00006 262 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 162 258 - -
Vium9112g00006 262 SMART ring_2 216 253 IPR001841 -
Vium9112g00006 262 SUPERFAMILY RING/U-box 215 260 - -
Vium9112g00006 262 Pfam Ring finger domain 215 254 IPR001841 -
Vium9112g00006 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 262 IPR013083 -
Vium9112g00006 262 CDD RING-H2_PA-TM-RING 216 254 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9112g00006 175 260 C3H Transcription Factor Family AT1G18760 36.559 5.65e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9112g00006 - - vum:124848049 530.406