Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9103g00001 ATGCGACCACCGCAGAAGAAGGTGAATTTCCGCAACGGCGACAAGGTGGAGGTGTGCAGCAACGAGGAGGGCTTCCTCGGCTCCTACTACCTCGCCACCGTCGTGTCGCGCCTCGACAACGGCCTCTACGTCGTACGCTACGACACGCTGCTGGAGGACGACGGGTCCCAGCCCCTCACCGAGACTATCTTCCCCAAAGAGCTTCGCCCCAAGCCTCCGCGCCTCGTTGCCGCCTCCTCCTTTCCGCTCTGCCAGCGCGTCGACGCCTTTGACAATGACGGCTGGTGGGTGGGCGAGATCTCCGGCAAGGTCGACGACCACCACTACTATGTTTATTTCTCCACCACTCGCGAGGAGATCGTGTACCCGTCCTCCGCAATTAGGGTTCATCAGGAGTGGCTCAACGGCCACTGGATTCGCGTAAAGCCAATCAATCTTTGA 441 0.6032 MRPPQKKVNFRNGDKVEVCSNEEGFLGSYYLATVVSRLDNGLYVVRYDTLLEDDGSQPLTETIFPKELRPKPPRLVAASSFPLCQRVDAFDNDGWWVGEISGKVDDHHYYVYFSTTREEIVYPSSAIRVHQEWLNGHWIRVKPINL 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9103g00001 146 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Vium9103g00001 146 SMART agenet_At_2 79 135 IPR014002 -
Vium9103g00001 146 SMART agenet_At_2 8 76 IPR014002 -
Vium9103g00001 146 Gene3D - 1 81 - -
Vium9103g00001 146 Pfam Agenet domain 13 73 IPR008395 -
Vium9103g00001 146 CDD Tudor_Agenet_AtDUF_rpt2_4 85 129 - -
Vium9103g00001 146 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 8 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9103g00001 Vium-Chr9103 48105 48750 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9103g00001 20 133 PHD Transcription Factor Family AT5G58610 33.824 5.68e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9103g00001 - - vra:106753183 298.13