Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9096g00010 ATGAAGAATAATAATTCACTCTTCTCCGCGGTTACCTTCACCCTCTTCACTGTCATCCTCTTAATCCTCTCTTCACTGTCACCCTCCCATGCCATTGGTTCCGCCTCCACTCTCGCCGTCACCTCTGCCGCCGTCTGCGGCGTGGTGGCATCGGAGCCGACACGGCGCATTGCGTGCTACAGCGATGGACACGTCGTCGCCGTTGCTCCCAACATCTCCTTCTCCGCGATCTCCGGCGGCCTGAGCTACTTCTGCGGCCTCCGGTCCGGCAACTACACTCTTCTCTGCTGGGACACCCTTTCGTACTTCCAAAGCAAGAGACTTTACAACAATGGCACTGTTCTATTCGAGAATCTCGCCCTCGGGGACTTCCAGGTTTGCGCCACCGCTGTCGGCGATGGAGCGGTGTCGTGTTGGAGAACCAATGCCGCCTTCGAATTGCCTTCTGGGTCGGACCGGTTTTCTTCTATTTCGTCTGGTTCGGGTTTTTCTTGCGGAATTTTGAAGGGTAGTAATTGGGTTCGGTGTTGGGGGCTTGAGGCTAGAGCGAGAAAAATGGAGAGTGAGTTTGGGAACGTGTCTATGGCGAGTCTTGTGGCTGGGGAGTCACATGTATGTGGGTTGAATTCAAGTGGGTATTTGGTTTGTAGAGGAAGTAACGATTTTGGTCAGATTGATGTTCCTGAAGGAGGGGCTTTGGAGTTTTCTGGTCTGGCTCTTGGAGCTGAGCATAGTTGTGCTATTCGGAGATCCAATGGTTCTGTCGTTTGTTGGGGTGGGAGAGGGTTGTTTGAGGTTAATGCTACAAAAGGTGTTTCTTTTGAGGTTCTTGTTTCTGGGTCCAATTTTACTTGTGGATTGACGACTAACAATTTTTCAGTTATTTGTTGGGGTCCTGGTTGGGTTAATACTTCAGGTTATGAAATTCCTTTGCCTCCTTTACTTCCAGGGCCTTGCGTTCAATCTTCCTGCAGTGAATGTGGGATATATCCTCAATCCGATTCTCTCTGTTCTGGCTATGGTAACATCTGTAAGCCAAGACCTTGTTGGCCTCCAATGCCAGGGCCAGAACCACCACAAATGGCACCGCCACCTGTGGTGGCAGTGCCACCTGCGTCTCAGTCAAGTGCCTTCACCAAAGGGTTATTGGCATTTGCCATTGTTGGATGCTTGGGAGGTGTTACTGGGATATGCAGTGTGATTTATTGCTTATGGACTGGGGTTTGTTTAGGGAAGAAGAAAATTCACAATTCTGTGCAGCCAACAATCACTAGAGGTGGCAGTGTAAACGGTGGTGGTGGTGGTTCTAGCAATAGTATTAGTCCTCCGTCGAGATCATCCACCATTAGGCGTCAAGGGTCGCGGATAATGAGACGCCAAAGGAGTGGAACCTCATCAGCAAAGCATCCTGAAAGGGCTGAGGAATTCACCTTGGCTGAGCTTGTTGCAGCTACGGATAATTTCTCCCTTGAGAACAAGATTGGTGCTGGAAGCTATGGCGTTGTTTATAGAGGCAAACTTGCAGATGGCCGTGAGGTGGCAATCAAAAGGGGCGAAACAGGTACAAAGATGAAGAAGTTTCAAGAGAAAGAGAGCGCATTCGAGTCAGAATTGGCCTTCTTGTCCCGTTTGCACCACAAGCACTTGGTAAGGCTGGTGGGGTTCTGTGAGGAGAAAGACGAGAGGCTCTTGGTGTATGAGTACATGAAGAATGGAGCATTGTATGATCATTTGCATGACAAAAACAATGTGGACAAGAGTAGCAGTGTCTTGAATTCTTGGCGAATGAGGATCAAAATCGCTCTGGATGCTTCGCGAGGAATTGAGTATCTCCATAACTACGCAGTTCCATCTATAATTCACCGAGACATAAAGTCTTCAAACATTCTCATCGACGCGACTTGGACAGCGAGAGTATCCGATTTTGGATTGTCATTGATGAGTCCAGAATCTGACCTTGATTACCGGCCAACGAAAGCAGCAGGAACAGTAGGATATATTGATCCTGAATATTATGGTCTAAATGTATTGACAGCAAAGAGTGATGTCTATGGTCTTGGAGTGGTACTGCTAGAGCTATTAACAGGAAAGAGAGCAATATTCAAGAATGATGAAAATGGAGGCACCCCAGTGAGTTTGGTGGACTTTGCAGTGCCAGTTATTATGGCAGGAGAATTGGCAAAATTTTTGGACCCAAGGGTTGAACCACCAGAGTTAAATGAGACAGAAGCAGTGGAGCTAGTGGCATATACAGCTATGCATTGTGTAAATTTGGAGGGGAAGGACAGACCAACAATGGCTGATATTGTGGCAAATTTGGAGCGTGCATTGGCTCTTTGTGATAGTAGTCATGGCAGCATTTCCAGTGGTACAGTCTCCATTGTATCAGACTGA 2394 0.4791 MKNNNSLFSAVTFTLFTVILLILSSLSPSHAIGSASTLAVTSAAVCGVVASEPTRRIACYSDGHVVAVAPNISFSAISGGLSYFCGLRSGNYTLLCWDTLSYFQSKRLYNNGTVLFENLALGDFQVCATAVGDGAVSCWRTNAAFELPSGSDRFSSISSGSGFSCGILKGSNWVRCWGLEARARKMESEFGNVSMASLVAGESHVCGLNSSGYLVCRGSNDFGQIDVPEGGALEFSGLALGAEHSCAIRRSNGSVVCWGGRGLFEVNATKGVSFEVLVSGSNFTCGLTTNNFSVICWGPGWVNTSGYEIPLPPLLPGPCVQSSCSECGIYPQSDSLCSGYGNICKPRPCWPPMPGPEPPQMAPPPVVAVPPASQSSAFTKGLLAFAIVGCLGGVTGICSVIYCLWTGVCLGKKKIHNSVQPTITRGGSVNGGGGGSSNSISPPSRSSTIRRQGSRIMRRQRSGTSSAKHPERAEEFTLAELVAATDNFSLENKIGAGSYGVVYRGKLADGREVAIKRGETGTKMKKFQEKESAFESELAFLSRLHHKHLVRLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVDKSSSVLNSWRMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSLMSPESDLDYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKNDENGGTPVSLVDFAVPVIMAGELAKFLDPRVEPPELNETEAVELVAYTAMHCVNLEGKDRPTMADIVANLERALALCDSSHGSISSGTVSIVSD 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9096g00010 797 ProSitePatterns Protein kinases ATP-binding region signature. 494 516 IPR017441 GO:0005524
Vium9096g00010 797 Gene3D Transferase(Phosphotransferase) domain 1 569 786 - -
Vium9096g00010 797 SUPERFAMILY Protein kinase-like (PK-like) 468 773 IPR011009 -
Vium9096g00010 797 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 194 783 IPR044815 GO:0004674
Vium9096g00010 797 MobiDBLite consensus disorder prediction 421 472 - -
Vium9096g00010 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Vium9096g00010 797 SUPERFAMILY RCC1/BLIP-II 67 302 IPR009091 -
Vium9096g00010 797 Gene3D - 60 309 IPR009091 -
Vium9096g00010 797 FunFam Serine/threonine-protein kinase-like protein CCR4 569 791 - -
Vium9096g00010 797 ProSiteProfiles Protein kinase domain profile. 488 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9096g00010 797 MobiDBLite consensus disorder prediction 421 451 - -
Vium9096g00010 797 FunFam serine/threonine-protein kinase-like protein CCR1 457 568 - -
Vium9096g00010 797 Gene3D Phosphorylase Kinase; domain 1 449 568 - -
Vium9096g00010 797 SMART serkin_6 488 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9096g00010 797 Pfam Regulator of chromosome condensation (RCC1) repeat 196 224 - -
Vium9096g00010 797 Pfam Protein kinase domain 489 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9096g00010 Vium-Chr9096 153683 156598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9096g00010 9 797 Receptor kinase-like Gene Family AT3G55950 60.147 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vium9096g00010 Pkinase 8.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9096g00010 - - gmx:100798905 1289.25