Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9096g00007 ATGATCCTGGCACGCATAATTGGAATGTTTGGTTCTATTGATATGGAAATGTTGGTGAAAGGACAAGAAACGCACAAGTACTTCACCAAAGAATATGATATTTATTACATAAATGAGGAGACTGATCAACTGGAGTTCTTGATTCCAGAAGAGTCATCGTTGGAGCAGCACCTGCAGGTTACTGATACTATGTTTATCAACTTTATCAGATACCTACTCAGCGTCAACCCTAAAAGAAGGCCTACCGCAAGACAAGCACTAAAGCATCCATGGCTTTCCTATGTTTACTAA 291 0.3952 MILARIIGMFGSIDMEMLVKGQETHKYFTKEYDIYYINEETDQLEFLIPEESSLEQHLQVTDTMFINFIRYLLSVNPKRRPTARQALKHPWLSYVY 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9096g00007 96 Gene3D Transferase(Phosphotransferase) domain 1 1 93 - -
Vium9096g00007 96 SUPERFAMILY Protein kinase-like (PK-like) 3 93 IPR011009 -
Vium9096g00007 96 PANTHER DUAL SPECIFICITY PROTEIN KINASE 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9096g00007 Vium-Chr9096 102078 104489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9096g00007 3 95 EF-hand Containing Proteins AT5G22840 25.490 6.89e-06 40.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vium9096g00007 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9096g00007 - - vum:124848025 197.593