Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9096g00006 ATGCAAAATGAACCGTATTGGTATAATGAAAAAGATGAAGACTATTTCATGACTCCTAATTTTGAAGGGCCAGACTATTTTGCGTGTCAGAGTGAAGATAAGTTTGTCATGACAGCAGAAACGGACAACCAACGGGACAATTCTCTGCATCTTGGTTCCAACTATGAAGAATTTCAACTAAAGGGGAATAGTGATGGTGGTTACATGGACAAGGCATGCCTTGATAATCATTTTTCTGTAGTGGATGGAACTGTGGCTCATTCAAAAGGGTATTGTTATGTTGATAACAAGGACCAGTTTAAAGGGGAATTAGAGGGTAAGGCTGAGAAACCCAGTGTTGCCTGCAGTTGTGAAGTTCCATTCTGCAAAAGCAGTCCTGGTTCTGGAGGTTCTTGCAGTCTGGATCCTACAAACTTCGGCTACCCTAACTTGAAGGAAATCCATCTGAACAATTTTCATTTGGGGGTTGTTGGGGACATTAACTCTTTTGATTCTACTTCAGAGCTAACTCTGGATCAAAGTTTTGACCACTACACTAAAAACGACAGCAGTAAGGAGTACAAGGGTCCTTACGACTTAACTATCGAAGTTACTGATAAAAATCTACCAAATGGACTTGACACCTATAAAGCACAACTTGGTGGAGAATTAACTGAAGACTGTCAAGATCCAGAGCTTGCTGCAGATGGAGAGGATACAACTGATGATGAGCTCTTGAAGTATACTCAAGAGGAAGAATACGAAGTGTTTGATCTGAGAATTATACATAGAAAGAACAGGACTGGATTTGAAGAAAACAAGGAACTTCCGATTGTGCTAAATACAGTCTTGGCTGGAAGGTATTATTTGACCGAGTATCTTGGTTCAGCTGCCTTCAGTAGGGTTGTTCAGGCACATGACCTTCAGACAGGGATAGATGTTTGTTTGAAGATTATTAAAAATGACAAAGACTTCTTTGATCAAAGCTTAGATGAAATCAAGCTTCTGAAACTTGTCAATAAGGGTGACCCAGCTGATGAACATCACATTTTGCGCCTTTATGACTATTTCTACCATCAGGAGCATTTATTCATTGTAACTGAACTTCTGCGAGCAAACTTGTATGAATTTCAGAAATTCAACCAAGAATCTGGAGGGGAAGCATATTTTACATTAAAGAGATTGCAGATCATTACTCGTCAGTGTTTGGAAGCATTGCAATACTTGCATGGCTTGGGAATTGTTCACTGTGACCTGAAGCCAGAAAACATTCTAATCAAAAGTTACAAAAGATGTGAGATAAAGGTTATTGATCTTGGAAGTAGTTGCTTCCAAACAGACAATCTGTGCCTATATGTACAGTCCAGATCCTATAGAGCTCCTGAAGTGATGTTAGGTCTTCAATATGATGAGAAGATTGACATATGGTCTCTGGGATGCATCTTGGCGGAGCTATGCTCTGGGGAAGTGCTGTTCCCAAATGATGCAGTTGTGATGATCCTGGCACGCATAATTGGAATGTTTGGTTCTATTGATATGGAAATGTTGGTGAAAGGACAAGAAACGCACAAGTACTTCACCAAAGAATATGATATTTATTACATAAATGAGGAGACTGATCAACTGGAGTTCTTGATTCCAGAAGAGTCATCGTTGGAGCAGCACCTGCAGGTTACTGATACTATGTTTATCAACTTTATCAGATACCTACTCAGCGTCAACCCTAAAAGAAGGCCTACCGCAAGACAAGCACTAAAGCATCCATGGCTTTCCTATGTTTACTAA 1764 0.3991 MQNEPYWYNEKDEDYFMTPNFEGPDYFACQSEDKFVMTAETDNQRDNSLHLGSNYEEFQLKGNSDGGYMDKACLDNHFSVVDGTVAHSKGYCYVDNKDQFKGELEGKAEKPSVACSCEVPFCKSSPGSGGSCSLDPTNFGYPNLKEIHLNNFHLGVVGDINSFDSTSELTLDQSFDHYTKNDSSKEYKGPYDLTIEVTDKNLPNGLDTYKAQLGGELTEDCQDPELAADGEDTTDDELLKYTQEEEYEVFDLRIIHRKNRTGFEENKELPIVLNTVLAGRYYLTEYLGSAAFSRVVQAHDLQTGIDVCLKIIKNDKDFFDQSLDEIKLLKLVNKGDPADEHHILRLYDYFYHQEHLFIVTELLRANLYEFQKFNQESGGEAYFTLKRLQIITRQCLEALQYLHGLGIVHCDLKPENILIKSYKRCEIKVIDLGSSCFQTDNLCLYVQSRSYRAPEVMLGLQYDEKIDIWSLGCILAELCSGEVLFPNDAVVMILARIIGMFGSIDMEMLVKGQETHKYFTKEYDIYYINEETDQLEFLIPEESSLEQHLQVTDTMFINFIRYLLSVNPKRRPTARQALKHPWLSYVY 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9096g00006 587 CDD PKc_DYRK_like 281 583 - -
Vium9096g00006 587 Pfam Protein kinase domain 284 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9096g00006 587 PANTHER DUAL SPECIFICITY PROTEIN KINASE 114 583 - -
Vium9096g00006 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Vium9096g00006 587 SUPERFAMILY Protein kinase-like (PK-like) 270 584 IPR011009 -
Vium9096g00006 587 SMART serkin_6 281 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9096g00006 587 Gene3D Transferase(Phosphotransferase) domain 1 335 583 - -
Vium9096g00006 587 Gene3D Phosphorylase Kinase; domain 1 276 362 - -
Vium9096g00006 587 ProSiteProfiles Protein kinase domain profile. 281 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9096g00006 587 FunFam Putative serine/threonine-protein kinase dyrk2 275 362 - -
Vium9096g00006 587 FunFam Serine/threonine-protein kinase ppk15 360 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9096g00006 Vium-Chr9096 98007 104489 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9096g00006 278 578 MAP Kinase Gene Family AT5G19010 31.464 2.09e-33 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vium9096g00006 Pkinase 4.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9096g00006 - - vum:124848025 1210.28