Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9096g00003 ATGTGTAGTGATTCAAAGAGCAAGCTTTCTTCTCCGAGTCTCGTGATGGAGAATAATATTCAGAAGCAGAATCTTGACTGTTTCCGCAATTTCTCGGCTTTACTTGAACTGTCTGCTTCCGATGATTTTGAAGCTTTCAAAAGAGAAGTGGACGAGAAGGGCATAGATATCAACGAGGCTGGCTTTTGGTATGGCAGAAGAATTGGGTCAAAGAAGATGGGATCTGAAACGAGGACCCCTCTCATGATTGCTTCTTTGTTTGGAAGCATTAAGGTTCTCAAGTATATTCTCGAGGCAGGAACTGTTGATGTGAACAGGGCCTGTGGTTCTGATATGGCCACTGCTCTTCATTGTGCTGCCTCTGGAGGCTCTGAATCTTCACATGAGATTGTGAAGCTCTTGCTAGATGCTGGGGCTGATGCTGAATCCCTTGATGCTACTGGAAACAGGCCAGCTAATCTGATTGCTCCTGCCTTTGATTCTTCCTCCAAATCCCGGAGGAAGGCCATGGAGTTGCTCCTCAGAGGTGGTGAAAGAGATGAACTGGTGAGCCAGGAGATGGAGCTGCAGATTTTCTCGGCTTCTTTATCAGCAAAAGAAGGCTCTGAGAAAAAAGAAGGAAGTGATAAGAAAGAGTATCCTGTTGATATATCCTTGCCTGATATAAACAACGGTGTGTATGGATCAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCCTACTCCCATGACTGGACTGAGTGTCCATTTGTTCATCCGGGCGAGAACGCAAGGAGGAGAGACCCAAGGAAATACCCTTATAGCTGTGTTCCTTGCCCAGAATTCCGTAAAGGGACCTGCCAGAAGGCTGATTCCTGTGAGTATGCTCACGGTGTTTTCGAGTCCTGGCTACACCCTGCCCAGTACAGAACAAGGCTCTGCAAGGACGAGACTGGCTGCACCAGAAAGGTCTGCTTCTTTGCCCACAAACCTGAAGAGTTACGCCCTGTGTATGCTTCAACCGGGTCAGCTATGCCTTCACCAAAATCCTATTCATCCAGTGCACTAGACATGACATCCATGAGTCCATTGGCTCTCAGTTCCACATCTTTACCTATGCCAACTGTTTCAACCCCACCCATGTCTCCATTGGCAGCAGCTTCATCTCCAAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTCACTCCACCATCACTTCAGCTTCCTGGTAGCAGACTCAAGGCTGCTCTCAGTGCCAGGGATCTGGAGATGGAGATGGAGCTGCTCGGTCTAGATAGTCCAGTTCGCCAACAACAACAGCAGCAGCAGCAGCAGTTGATAGAGGAGATTGCCAGGATCTCTTCTCCGTCTTTCCGCAACAAGGAATTCAACAGGATTGGTGATTTGAATCCAACCAACCTTGATGGCCTGTTAGCCGCTGCTGATCCTTCTGTGTTATCACAACTACATGGACTTTCTGTGCAGCCTTCGACACCCACCCAAACCGGGCTTCAGATGCGCCAGAACATGAACCACCTTCGTGCGAGTTATCCATCCAACATCCCTTCCTCTCCTGTGAGGAAGCCCTCAGCTTTTGGGTTTGACTCATCAGCTGCCGTGGCAGCTGCAGTGATGAACTCAAGGTCTGCCGCCTTCGCCAAGCGAAGCCAAAGTTTCATCGATCGTGGTGCTTCAACCCACCATCTTGGCCTGTCTTCACCTTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTCTCAGATTGGAGTTCCCCAACCGGGAAACTCGATTGGGGTGTCAACGGAGATGAGCTGAACAAGCTCAGGAAATCTGCTTCATTTGGGTTCAGAAACAATGGGGTAACTGCTTCGCCCATGGCTCAGCACGAACATGTTGAGCCAGATGTGTCATGGGTTCATTCGTTGGTTAAGGATGTTCCTTCTGAGAGGTCGGAGATGTTTGGTGGTGATCTGAGTAAAGAGATGCTGCCACCATGGGTGGAGCAGCTGTACATAGAGCAGGAGCAGATGGTAGCATGA 2034 0.4921 MCSDSKSKLSSPSLVMENNIQKQNLDCFRNFSALLELSASDDFEAFKREVDEKGIDINEAGFWYGRRIGSKKMGSETRTPLMIASLFGSIKVLKYILEAGTVDVNRACGSDMATALHCAASGGSESSHEIVKLLLDAGADAESLDATGNRPANLIAPAFDSSSKSRRKAMELLLRGGERDELVSQEMELQIFSASLSAKEGSEKKEGSDKKEYPVDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKADSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSAMPSPKSYSSSALDMTSMSPLALSSTSLPMPTVSTPPMSPLAAASSPKSGSLWQNKINLTPPSLQLPGSRLKAALSARDLEMEMELLGLDSPVRQQQQQQQQQLIEEIARISSPSFRNKEFNRIGDLNPTNLDGLLAAADPSVLSQLHGLSVQPSTPTQTGLQMRQNMNHLRASYPSNIPSSPVRKPSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGASTHHLGLSSPSNPSCRVSSTLSDWSSPTGKLDWGVNGDELNKLRKSASFGFRNNGVTASPMAQHEHVEPDVSWVHSLVKDVPSERSEMFGGDLSKEMLPPWVEQLYIEQEQMVA 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9096g00003 677 SMART ANK_2a 76 106 IPR002110 GO:0005515
Vium9096g00003 677 SMART ANK_2a 111 143 IPR002110 GO:0005515
Vium9096g00003 677 Pfam Ankyrin repeats (3 copies) 69 142 IPR002110 GO:0005515
Vium9096g00003 677 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Vium9096g00003 677 Gene3D - 29 176 IPR036770 -
Vium9096g00003 677 Gene3D - 272 334 - -
Vium9096g00003 677 PANTHER UNKEMPT FAMILY MEMBER 36 644 IPR045234 -
Vium9096g00003 677 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Vium9096g00003 677 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Vium9096g00003 677 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Vium9096g00003 677 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Vium9096g00003 677 SUPERFAMILY Ankyrin repeat 28 165 IPR036770 -
Vium9096g00003 677 ProSiteProfiles Zinc finger C3H1-type profile. 271 298 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9096g00003 Vium-Chr9096 13346 16293 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9096g00003 31 672 C2H2 Transcription Factor Family AT5G12850 40.311 3.99e-148 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium9096g00003 Ank_2 1.9e-08 CL0465