Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9094g00002 ATGGAAAAGCTCATTTTCAACTGTTTCATTGGATGCTGTCTTCTTTATTCTCTCTTGCCTGTGCATGGCAAACCATTGTCATGCAATGAAACACCCTACCCCCATGTGTGCAAACATTACGTTGTCACTACCAACACACTATCAACCCTAGATGCTCCGTCCTCTTCCTTCCACGACGTGGCCCTTAAGGTCACCGTGGATCAAGCCATGGAGCTTTATAAACTTGTCTCAAACATGGACCTAAATAATTTCAAGGATGAACGAGCCAAATCGGCTTGGGAAGATTGTTTGGAGCTCTATGAGGACACACTTTATCAACTCAAACGCTCAGCGAACTCGAACAATCTAAATGACAGGTTGACTTGGCAAAGTGCATCCATTGCCAATCACCAAACATGCCAAAACGGTTTCACCGAACTCAACGTTCCCTCTCACCTAAACTACTTCCCCAACATGTTAAGCAATTTCTCCAAACTGCTTAGCAATTCCTTGTCCCTTAGCAAGGCAATGACTTTGACATCATTGTCATCGACTAAACAAAATGGTGGGCGAAAGCTGCTTTCAGACGGCTTCCCCTCTTGGATCTCTCATTCAGACAGAAGGCTTCTTCAGGAAACAACATCAAAAGCTGATGTTGTGGTGGCACAGGATGGCAGTGGGAACTATAAAACCATCTCAGAGGGTGTGGCTGCAGCTTCTAAGCTCAGTGGGAAAGGGCGTGTTGTGGTGCACGTCAAAGCTGGTGTTTACAAAGAGAATATTGATATCTCCAGAACTGTGAAAAACTTGATGATCATCGGAGATGGCATGGGTGCTACTATTGTTACTGGTAGTAGAAACGCGCAAGATGGTTCCACTACTTTTCGTTCTGCTACTTTTGCGGTTTCCGGAGACGGCTTCATTGCTCGGGACATCACCTTCGAAAACACCGCCGGACCGCAAAAGCACCAAGCGGTGGCTCTCCGTTCCGGATCCGACCACTCGGTGTTTTATCGGTGCAGCTTTAAGGGGTACCAAGACACCTTATACGTGTACGCCAACCGCCAATTCTACCGTGACTGTGACGTATACGGAACCGTAGACTTCATTTTCGGGGACGCCGTGTCGGTGCTTCAAAACTGCAACATCTACGTGAGGAGGCCGATGGGCAACCAGCAGAACACGGTTACAGCACAAGGAAGAACCGACCCTAACGAGAACACAGGCATCATCATCCATAATTGTCAAATCACTGCAGCTGGAGACCTGAAAGCGGTGCAGGGCTCTTTCAGAACCTATCTGGGTCGCCCCTGGCAAAAGTACTCAAGGACTGTGATCATGAAGAGTGCCCTTGATGGCTTGATTAACCCCGCAGGTTCGCCATTTTTCTTCATACTCTATAACTGCATCAATATTCTATAA 1401 0.4725 MEKLIFNCFIGCCLLYSLLPVHGKPLSCNETPYPHVCKHYVVTTNTLSTLDAPSSSFHDVALKVTVDQAMELYKLVSNMDLNNFKDERAKSAWEDCLELYEDTLYQLKRSANSNNLNDRLTWQSASIANHQTCQNGFTELNVPSHLNYFPNMLSNFSKLLSNSLSLSKAMTLTSLSSTKQNGGRKLLSDGFPSWISHSDRRLLQETTSKADVVVAQDGSGNYKTISEGVAAASKLSGKGRVVVHVKAGVYKENIDISRTVKNLMIIGDGMGATIVTGSRNAQDGSTTFRSATFAVSGDGFIARDITFENTAGPQKHQAVALRSGSDHSVFYRCSFKGYQDTLYVYANRQFYRDCDVYGTVDFIFGDAVSVLQNCNIYVRRPMGNQQNTVTAQGRTDPNENTGIIIHNCQITAAGDLKAVQGSFRTYLGRPWQKYSRTVIMKSALDGLINPAGSPFFFILYNCINIL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9094g00002 466 SUPERFAMILY Pectin lyase-like 206 452 IPR011050 -
Vium9094g00002 466 ProSitePatterns Pectinesterase signature 2. 356 365 IPR033131 -
Vium9094g00002 466 FunFam Pectinesterase 25 170 - -
Vium9094g00002 466 CDD PMEI-like_3 26 143 - -
Vium9094g00002 466 SMART PMEI_2 21 166 IPR006501 GO:0004857
Vium9094g00002 466 FunFam Pectinesterase 4 208 455 - -
Vium9094g00002 466 Pfam Plant invertase/pectin methylesterase inhibitor 27 166 IPR006501 GO:0004857
Vium9094g00002 466 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 171 IPR035513 -
Vium9094g00002 466 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Vium9094g00002 466 ProSitePatterns Pectinesterase signature 1. 237 256 IPR018040 -
Vium9094g00002 466 PANTHER PECTINESTERASE 26 453 - -
Vium9094g00002 466 Gene3D - 205 455 IPR012334 -
Vium9094g00002 466 NCBIfam pectinesterase inhibitor domain 27 170 IPR006501 GO:0004857
Vium9094g00002 466 Pfam Pectinesterase 211 452 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9094g00002 Vium-Chr9094 12084 14251 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9094g00002 27 452 Carbohydrate Esterase AT1G23200 51.422 4.15e-153 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9094g00002 - - vum:124848015 925.235