Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9094g00001 ATGGAAAAGCTCATTTTCAACTGTTTCATTGGATGCTGTCTTCTTTATTCTCTCTTGCCTGTGCATGGCAAACCATTGTCATGCAATGAAACACCCTACCCCCATGTGTGCAAACATTACGTTGTCACTACCAACACACTATCAACCCTAGATGCTCCGTCCTCTTCCTTCCACGACGTGGCCCTTAAGGTCACCGTGGATCAAGCCATGGAGCTTTATAAACTTGTCTCAAACATGGACCTAAATAATTTCAAGGATGAACGAGCCAAATCGGCTTGGGAAGATTGTTTGGAGCTCTATGAGGACACACTTTATCAACTCAAACGCTCAGCGAACTCGAACAATCTAAATGACAGGTTGACTTGGCAAAGTGCATCCATTGCCAATCACCAAACATGCCAAAACGGTTTCACCGAACTCAACGTTCCCTCTCACCTAAACTACTTCCCCAACATGTTAAGCAATTTCTCCAAACTGCTTAGCAATTCCTTGTCCCTTAGCAAGGCAATGACTTTGACATCATTGTCATCGACTAAACAAAATGGTGGGCGAAAGCTGCTTTCAGACGGCTTCCCCTCTTGGATCTCTCATTCAGACAGAAGGCTTCTTCAGGAAACAACATCAAAAGCTGATGTTGTGGTGGCACAGGATGGCAGTGGGAACTATAAAACCATCTCAGAGGGTGTGGCTGCAGCTTCTAAGCTCAGTGGGAAAGGGCGTGTTGTGGTGCACGTCAAAGCTGGTGTTTACAAAGAGAATATTGATATCTCCAGAACTGTGAAAAACTTGATGATCATCGGAGATGGCATGGGTGCTACTATTGTTACTGGTAGTAGAAACGCGCAAGATGGTTCCACTACTTTTCGTTCTGCTACTTTTGCGGTTTCCGGAGACGGCTTCATTGCTCGGGACATCACCTTCGAAAACACCGCCGGACCGCAAAAGCACCAAGCGGTGGCTCTCCGTTCCGGATCCGACCACTCGGTGTTTTATCGGTGCAGCTTTAAGGGGTACCAAGACACCTTATACGTGTACGCCAACCGCCAATTCTACCGTGACTGTGACGTATACGGAACCGTAGACTTCATTTTCGGGGACGCCGTGTCGGTGCTTCAAAACTGCAACATCTACGTGAGGAGGCCGATGGGCAACCAGCAGAACACGGTTACAGCACAAGGAAGAACCGACCCTAACGAGAACACAGGCATCATCATCCATAATTGTCAAATCACTGCAGCTGGAGACCTGAAAGCGGTGCAGGGCTCTTTCAGAACTTATCTGGGTCGCCCCTGGCAAAAGTACTCAAGGACTGTGATCATGAAGAGTGCCCTTGATGGCTTGATTAACCCCGCAGGTTGGTCTGAGTGGAGCGGAAACTTTGCACTGAGCACTCTATATTACGGTGAACATGCGAACACAGGAGCAGGTGCCGGCACCGGAGGGAGGGTGAATTGGGGAGGGTTTCGTGTGCTCTCCAGCGCTGAGGCTGTGAAGTTCACCGTCGGAGAATTCTTGGCCGGTGGCTCGTGGATTCCTGGGAGTGGCGTGCCCTTTGACGCAGGTTTATGA 1569 0.4908 MEKLIFNCFIGCCLLYSLLPVHGKPLSCNETPYPHVCKHYVVTTNTLSTLDAPSSSFHDVALKVTVDQAMELYKLVSNMDLNNFKDERAKSAWEDCLELYEDTLYQLKRSANSNNLNDRLTWQSASIANHQTCQNGFTELNVPSHLNYFPNMLSNFSKLLSNSLSLSKAMTLTSLSSTKQNGGRKLLSDGFPSWISHSDRRLLQETTSKADVVVAQDGSGNYKTISEGVAAASKLSGKGRVVVHVKAGVYKENIDISRTVKNLMIIGDGMGATIVTGSRNAQDGSTTFRSATFAVSGDGFIARDITFENTAGPQKHQAVALRSGSDHSVFYRCSFKGYQDTLYVYANRQFYRDCDVYGTVDFIFGDAVSVLQNCNIYVRRPMGNQQNTVTAQGRTDPNENTGIIIHNCQITAAGDLKAVQGSFRTYLGRPWQKYSRTVIMKSALDGLINPAGWSEWSGNFALSTLYYGEHANTGAGAGTGGRVNWGGFRVLSSAEAVKFTVGEFLAGGSWIPGSGVPFDAGL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9094g00001 522 ProSitePatterns Pectinesterase signature 2. 356 365 IPR033131 -
Vium9094g00001 522 CDD PMEI-like_3 26 143 - -
Vium9094g00001 522 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 171 IPR035513 -
Vium9094g00001 522 SMART PMEI_2 21 166 IPR006501 GO:0004857
Vium9094g00001 522 FunFam Pectinesterase 205 522 - -
Vium9094g00001 522 NCBIfam pectinesterase inhibitor domain 27 170 IPR006501 GO:0004857
Vium9094g00001 522 PANTHER PECTINESTERASE 26 512 - -
Vium9094g00001 522 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Vium9094g00001 522 Pfam Plant invertase/pectin methylesterase inhibitor 27 166 IPR006501 GO:0004857
Vium9094g00001 522 SUPERFAMILY Pectin lyase-like 206 521 IPR011050 -
Vium9094g00001 522 Gene3D - 205 522 IPR012334 -
Vium9094g00001 522 ProSitePatterns Pectinesterase signature 1. 237 256 IPR018040 -
Vium9094g00001 522 FunFam Pectinesterase 25 170 - -
Vium9094g00001 522 Pfam Pectinesterase 211 507 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9094g00001 Vium-Chr9094 4568 8980 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9094g00001 2 522 Carbohydrate Esterase AT1G23200 50.722 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9094g00001 - - gmx:100775898 910.212