Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9085g00001 ATGGATGCTAGAACATGTTATGATTTTTCTTCGTTGCAATCTCTTCAATATCTACTTGAGCTTGAACATGGTTCCACACACTTGGACTCTAATGGCATGGAAAATATCATCGATGAGAAGAAAGTGTCTGGAAGAGAACAGCCTAGGGCAGCGCGTGAAGTTCACGCGCCTCCCCAATGGAAGCGATATAGGGGTGTGAGACGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGAGATCCAAAGAAAAATGGAGCTAGGGTTTGGCTTGGGACTTATGTAACTGAAGAAGAAGCAGGTTTAGCTTATGATAGAGCTGCTTTCAAAATACATGGAAGTAAAGCTAAGTTAAATTTTCCTAATTCTTTTGGTGGTGATATTCCAGAATACAAATCACAAAATGGTGTTTTCTGA 414 0.4275 MDARTCYDFSSLQSLQYLLELEHGSTHLDSNGMENIIDEKKVSGREQPRAAREVHAPPQWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAGLAYDRAAFKIHGSKAKLNFPNSFGGDIPEYKSQNGVF 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9085g00001 137 CDD AP2 61 122 IPR001471 GO:0003700|GO:0006355
Vium9085g00001 137 Gene3D AP2/ERF domain 61 121 IPR036955 GO:0003700|GO:0006355
Vium9085g00001 137 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Vium9085g00001 137 PRINTS Ethylene responsive element binding protein signature 102 122 IPR001471 GO:0003700|GO:0006355
Vium9085g00001 137 FunFam Ethylene-responsive transcription factor 2 61 121 - -
Vium9085g00001 137 SUPERFAMILY DNA-binding domain 62 122 IPR016177 GO:0003677
Vium9085g00001 137 MobiDBLite consensus disorder prediction 30 57 - -
Vium9085g00001 137 PANTHER DNA-BINDING DOMAIN 45 121 IPR044808 GO:0003700|GO:0009873
Vium9085g00001 137 Pfam AP2 domain 62 112 IPR001471 GO:0003700|GO:0006355
Vium9085g00001 137 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Vium9085g00001 137 MobiDBLite consensus disorder prediction 33 57 - -
Vium9085g00001 137 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9085g00001 Vium-Chr9085 12318 12917 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9085g00001 55 125 AP2-EREBP Transcription Factor Family AT2G44840 76.389 2.83e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium9085g00001 AP2 9.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9085g00001 K09286 - gmx:100793710 190.274