Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9080g00001 ATGGTGTTCTTATTTCCAAAGCTTCAGCCCATTAAGCTCATATCATTATGGTTCCTTCTACTTGTAATGGCAACTTCTCTCCATGCAACACTGTCTTCCTCACTCTCACTTCAATACACAGAAGCCAACGCTTTGTTGAAGTGGAAAGCAAGCTTTCACAACTCAACTCATACATTGCTATCTTCATGGCATGGCAATACTTCTTGCAATTGGCTTGGACTTGCTTGTGACCACTCAGGATCAGTCTCCAACATAAATCTCACAAACATTGGATTAAGTGGTACGCTTCAAACTCTAAACTTTTCATCACTTCCAAACATTCTCACTCTTGATATCAGTTTGAACTCCTTCACTGGAAGCATTCCTCCTCAAATTGGAGTGTTGTCCAAACTCACTCATCTTGATTTAAGTCACAATCATCTCACCGGTACTATCCCAAATTCTCTCGGAAAGCTATCAGTCTTGTCACATATTAGCTTGTGGAATTGCAGTCTTACAGGGTCTATTCCAAAATCTATAGGAAATATGGCAAGTCTTGTATATCTAGATTTTACGCAGAACAACCTTTATGGACATATTCCTCACGAAATTGGAAATTTGTCAAACTTAGAGAATTTGTGGTTAGCAATTAATAACTTAGACGGTTCCATTCCTCAAGAAATAGGTAAGCTGCAGAACCTAAAGGATTTATATATATATAACAACAATTTATCTGGAAACATTCCCGTGGAAATGGGGAAGTTGGTCAACTTGACCTGGTTATGGCTTTTTAACAATAATCTTTCGGGTTCTATTCCTCGAGAAATTGGAATGATGACAAATTTGCTTCAAGTTGATTTGTCCAGTAACTCTTTGTCAGGTACAATCCCCCCTACAATTGGAAATCTGAGCAAATTAAGGAATTTATACATATATACCAACCATCTCTCTGGTTCCATTCCTAATGAAGTGGGGAAACTCTATTCTCTTATGACAATCCAATTGTTAGAAAATAATCTCTCTGGACCAATCCCATCTTCCATCGGTAACTTGGTGAACTTGGATTCTATTCGTCTTAATGGAAACAAACTCTCCGGAACAATTCCTTCCACTATTGGTAACTTGACAAAACTTACCACACTTGCTTTATTCTCAAATAAGCTTAGTGGACACATCCCAATAGAAATGAATATGCTTAACAACCTGGAAAAATTGCATTTATATGACAATAATTTCATTGGTCAATTGCCTCACAATGTTTGCACTAGCGGAAAGTTGATAAACTTTACTGCTGGTAGAAACTATTTCACAGGTCCAGTATCCAAGAGTTTGAAGAATTGCACTAGCCTCATAAGAGTGAGGCTTGAACAAAACCAATTGACAGGAAATGTGACGGAGGATTTTGGTGTGTATCCAAACTTGGATTACATAGATCTGAGTGATAATAACTTTTATGGCCATCTTTCTCCAAAATGGGGGAAATGCCATAATCTCACAAGCCTCAAAATCTCCAACAATAATTTATCAGGAAGCATTCCACCAGAACTAATTCAGGCAACCAATTTACATGTACTTGAACTGTCTTCAAATCACCTCGTAGGAGACATTCCCGAAGATTTAGGTAATTTGACCTACTTGTTCAAACTCTCTCTCAATAATAATAATCTTTCAGGGAATGTTCCTATACAGATAGCATCAATGCTAGATCTTGACACTTTAGAGCTCGGAGCAAATGGTTTTTCTGGCATAATTCCAACTCAACTCGGTAATTTGGCCAAGTTATTACACTTGAATTTGAGCCGAAATAAATTTACGGAAAATATTCCATCCGAGTTTGGTAAATTAAAATATGTTCAAAGTCTCGATCTTAGCATGAACATTTTGAGTGGAAAAATACCACCCGTGCTTGGACAGTTGAAAAGCTTAGAAACATTAAATCTCTCACACAATCATCTTTCAGGCGATCTCTCCGGCCTTGACGAGATGAGAAGTTTGATATCTATTGATATATCATACAACCAATTACAGGGTCCACTTCCCAACATTCCAGCCTTCAAAATGGCTACAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGTAATGTCTCAGGCTTAGAACCATGTCCAACATCACCTGACAATTATGAAAATCATCATAAGGCTAGCAGATTCATATTGGTATTTTTACCCATTGGTTTGGGCACTTCCATGCTAGCGTTATTTGTCTTTGGAGTGTCTTATCATTATTATCGAAGCTCAAAGAAGAAAGCACATGAAGATGAAGAATCACCAGGTCAAAATCTCTTTTCGATATGGAGTTTTGATGGAAAGATGGTGTATGATAACATAATTGAAGCCACAGAAGATTTTGACAATAAACATCTCATTGGAGTTGGAGGACAAGCGAGTGTTTACAAAGCTGAATTGCAAACAGGTCAAGTTGTTGCAGTTAAGAAATTCCATTCAGTAGAAAATGGAGAAATGTCTAACGTTAAAGCTTTCGCAAGTGAAATTCAAGCTTTGACAGAGATTCGACATCGTAACATTGTGAAGTTATACGGGTATTGTTCTCATTCCCGATTCTCGTTTTTGGTGTATGAGTTGATGGAAAAGGGAAGCATTGATAAGATTTTAAAAGACGATGAAGAGGCAATTGCATTTAATTGGAAAAGGAGGGTTGATGCCATTAAAGGTGTGGCAAATGCTTTATGCTATATGCATAATGATTGTTCACCTCCAATTGTTCATCGAGATATATCAAGCAAGAATGTTCTTTTGAATTTGGAGTATGTGGCTCATGTCTCAGATTTTGGAACAGCCAAGCTTCTTAATACTAATTCAACAAATTGGAGTTCATTCGTGGGAACTTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAATAAATGAAAAATGCGATGTGTATAGCTTTGGGGTATTAGCACTGGAAATAGTTTTGGGAGAGCATCCTGGAGATCGTATAAGTTCATTGTTGACATCTTCATCGAATGTGATGGAGTCAACACTTGATATTACTTCATTGATGGATAAGTTAGATGAGCGTCTCCAACATCCTGCAAAACCTATGGCTAAGGAGATAGAATCAATTCTAAGGATGGCAAATGCTTGCTTGACTGAAAATCCTCGTTCTCGCCCTACCATGGACCAAGTTGCCAGCTACTTTTCAAAGTACAAGTCATGTTCATTCAATTGA 3201 0.3755 MVFLFPKLQPIKLISLWFLLLVMATSLHATLSSSLSLQYTEANALLKWKASFHNSTHTLLSSWHGNTSCNWLGLACDHSGSVSNINLTNIGLSGTLQTLNFSSLPNILTLDISLNSFTGSIPPQIGVLSKLTHLDLSHNHLTGTIPNSLGKLSVLSHISLWNCSLTGSIPKSIGNMASLVYLDFTQNNLYGHIPHEIGNLSNLENLWLAINNLDGSIPQEIGKLQNLKDLYIYNNNLSGNIPVEMGKLVNLTWLWLFNNNLSGSIPREIGMMTNLLQVDLSSNSLSGTIPPTIGNLSKLRNLYIYTNHLSGSIPNEVGKLYSLMTIQLLENNLSGPIPSSIGNLVNLDSIRLNGNKLSGTIPSTIGNLTKLTTLALFSNKLSGHIPIEMNMLNNLEKLHLYDNNFIGQLPHNVCTSGKLINFTAGRNYFTGPVSKSLKNCTSLIRVRLEQNQLTGNVTEDFGVYPNLDYIDLSDNNFYGHLSPKWGKCHNLTSLKISNNNLSGSIPPELIQATNLHVLELSSNHLVGDIPEDLGNLTYLFKLSLNNNNLSGNVPIQIASMLDLDTLELGANGFSGIIPTQLGNLAKLLHLNLSRNKFTENIPSEFGKLKYVQSLDLSMNILSGKIPPVLGQLKSLETLNLSHNHLSGDLSGLDEMRSLISIDISYNQLQGPLPNIPAFKMATIEALRNNKGLCGNVSGLEPCPTSPDNYENHHKASRFILVFLPIGLGTSMLALFVFGVSYHYYRSSKKKAHEDEESPGQNLFSIWSFDGKMVYDNIIEATEDFDNKHLIGVGGQASVYKAELQTGQVVAVKKFHSVENGEMSNVKAFASEIQALTEIRHRNIVKLYGYCSHSRFSFLVYELMEKGSIDKILKDDEEAIAFNWKRRVDAIKGVANALCYMHNDCSPPIVHRDISSKNVLLNLEYVAHVSDFGTAKLLNTNSTNWSSFVGTFGYAAPELAYTMEINEKCDVYSFGVLALEIVLGEHPGDRISSLLTSSSNVMESTLDITSLMDKLDERLQHPAKPMAKEIESILRMANACLTENPRSRPTMDQVASYFSKYKSCSFN 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9080g00001 1066 Gene3D Ribonuclease Inhibitor 38 186 IPR032675 -
Vium9080g00001 1066 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 292 1058 - -
Vium9080g00001 1066 SUPERFAMILY RNI-like 278 673 - -
Vium9080g00001 1066 SUPERFAMILY L domain-like 51 407 - -
Vium9080g00001 1066 FunFam MDIS1-interacting receptor like kinase 2 isoform A 318 413 - -
Vium9080g00001 1066 Gene3D Phosphorylase Kinase; domain 1 744 862 - -
Vium9080g00001 1066 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 194 291 - -
Vium9080g00001 1066 FunFam Uncharacterized protein 414 711 - -
Vium9080g00001 1066 Gene3D Ribonuclease Inhibitor 187 277 IPR032675 -
Vium9080g00001 1066 Pfam Protein kinase domain 785 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9080g00001 1066 FunFam Nuclear pore complex protein NUP107 38 193 - -
Vium9080g00001 1066 PRINTS Leucine-rich repeat signature 131 144 - -
Vium9080g00001 1066 PRINTS Leucine-rich repeat signature 632 645 - -
Vium9080g00001 1066 Gene3D Ribonuclease Inhibitor 278 390 IPR032675 -
Vium9080g00001 1066 Pfam Leucine rich repeat 563 619 IPR001611 GO:0005515
Vium9080g00001 1066 Gene3D Transferase(Phosphotransferase) domain 1 863 1064 - -
Vium9080g00001 1066 SMART LRR_typ_2 272 296 IPR003591 -
Vium9080g00001 1066 SMART LRR_typ_2 128 152 IPR003591 -
Vium9080g00001 1066 SMART LRR_typ_2 584 608 IPR003591 -
Vium9080g00001 1066 SMART LRR_typ_2 200 224 IPR003591 -
Vium9080g00001 1066 SMART LRR_typ_2 513 536 IPR003591 -
Vium9080g00001 1066 SMART LRR_typ_2 344 368 IPR003591 -
Vium9080g00001 1066 SMART LRR_typ_2 488 512 IPR003591 -
Vium9080g00001 1066 SMART LRR_typ_2 248 271 IPR003591 -
Vium9080g00001 1066 SMART LRR_typ_2 632 655 IPR003591 -
Vium9080g00001 1066 SMART LRR_typ_2 392 416 IPR003591 -
Vium9080g00001 1066 FunFam Leucine-rich repeat receptor protein kinase MSP1 746 862 - -
Vium9080g00001 1066 Pfam Leucine Rich Repeat 130 152 IPR001611 GO:0005515
Vium9080g00001 1066 ProSiteProfiles Protein kinase domain profile. 784 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9080g00001 1066 Pfam Leucine rich repeat N-terminal domain 41 77 IPR013210 -
Vium9080g00001 1066 FunFam MDIS1-interacting receptor like kinase 2 863 1063 - -
Vium9080g00001 1066 Gene3D Ribonuclease Inhibitor 391 705 IPR032675 -
Vium9080g00001 1066 SUPERFAMILY Protein kinase-like (PK-like) 764 1056 IPR011009 -
Vium9080g00001 1066 ProSiteProfiles Leucine-rich repeat profile. 634 656 IPR001611 GO:0005515
Vium9080g00001 1066 ProSitePatterns Tyrosine protein kinases specific active-site signature. 908 920 IPR008266 GO:0004672|GO:0006468
Vium9080g00001 1066 ProSiteProfiles Leucine-rich repeat profile. 130 152 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9080g00001 Vium-Chr9080 6874 10474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9080g00001 19 956 Receptor kinase-like Gene Family AT4G08850 45.741 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium9080g00001 Pkinase 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9080g00001 - - gsj:114395001 1475.69