Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9078g00013 ATGAAGGTTCGTACTGATGTGAGTTCTGAATACTGGCTCAATGCTAAGTGTGCTTATCCGGACAGGCAATTGTTTGATTGGGGCATGATGAGGCTGCGTCGTCCATTATATGGGGTTGGAGATCCATTTGCCATGGATGCTGATGATCAATTAAGGAAGAAACGGGAGGCCGAGAGACTATCAAGATTAGAAGAAAAGGAGAAAAATCATATAGAGACTAGAACAAGGAAATTTTTTGCAGAAATACTCAACACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGAGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGACAAAGACAACGAGCAACTCGGGCAGAGAAATTGAGGTTCCAAGCCTTGAAGGCTGATGATCAAGAAGCGTACATGAGAATGGTGAAAGAGAGTAAGAATGAGAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTAGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAAGACAAAAAGTATTCAGATGGTATTGAGCCATTGGAAGATTCTGAAGCAGATTTACCAGAGTCAGAAAAGAATGGAATTTCTAAGGAGTCACCTATTGATGAAGACGATATGATCGATTCTGATCATAATGGTGATTCCAGTGATTTACTTGAGGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTGACTGAGCAACCATCTATTCTTCAAGGTGGAGAGTTAAGACCATACCAGATAGAGGGGCTCCAGTGGATGCTTTCTTTGTTCAATAACAATTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACGATACAAACAATTTCGCTTATAGCATATCTTATGGAAAACAAGGGTGTTACCGGTCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCAAATTGGGTCAATGAATTCACAACATGGGTTCCTAGCATCACAGCTATTCTTTATGACGGACGGCTGGATGAGAGGAAGGCAATGAAGGAAGAGTTATCAGGGGAGGGGAAATTCAATGTTTTATTGACTCACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCAATGGAAGTACTTGATTGTGGATGAAGGGCACCGGTTGAAAAACCATGAGTCTGCTCTGGCAAGAACCTTGGACAATGGTTATCACATCCAACGAAGACTCCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTTTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCGGTTCAAAATTTCGAGGACTGGTTTAATGCCCCCTTTGCAGACCGAGTTGATGTCTCCCTCACCGATGAGGAACAACTATTGATCATCCGGCGCCTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAAGATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACAGATGTAGGCAGAGTTGGGTTGGACAACGGTTCTGGAAAGTCAAAAAGTCTACAAAATTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTATTCGTGGGAGAATATGATATGTATAAACGTAAGGAGGAGATTGTTAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTTATGGACATTCTTGAAATCTATTTACGACTTCATGATTTTAAGTATCTTAGACTTGATGGTTCAACAAAAACTGAGGAAAGAGGCAATCTTCTAAGGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGATAGCGATTGGAATCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGCATTGGACAGAAAAAGGAAGTTAGGGTTTTTGTTTTGGTTAGTGTAGGATCAATTGAAGAGGTGATTCTAGAGCGTGCAAAACAAAAAATGGGCATTGATGCCAAAGTTATCCAAGCAGGACTTTTCAACACAACTTCGACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGCAGAGGTACAAGCTCACTTGGGACAGATGTGCCGAGTGAGAGAGAAATTAACCGTCTTGCTGCCCGATCTGACGAGGAGTTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAATTACAGATCCCGTCTCATGGAAGAACACGAATTGCCAGATTGGGTATATTCTCCAATTAACAAGGATGATAAGTCCAAAGATTTCAACAGTGCTGTCACTGGAAAACGGAAAAGAAAAGAAGTGGTATACGCAGATACGTTGAGTGATCTGCAATGGATGAAGGCTGTGGAGAACGGAGAAGACATATCAAAGTTTTCAGCTAAAGGAAAAAGAAGAGACCACCACTCATCTGACAGCATTGCTCAAGCCAGCGATAACACAGTAGCAGAAGAAAGTTTAGAGTTGAGGACTGAAAGTGTTCCTATGACAAACGATCGCACGAGTGAAGATAGTTTCCATGTGACCCCTTCTTCAAAGAGATTCAAATCTGAAGGAACGAATTTCCTGAAACATACATACGAGGATGTTGGAAGTGGTTTGAACCACCATGTGTTATCATGGAATACTCACAAAAAGAAGAGGTCAAGTTTTCTGGGCCAGGGTTCATTATCTGATGCCAGAGGGCATTCTTCCAATGGAAGAGCAAACTGGAACTGA 2859 0.4127 MKVRTDVSSEYWLNAKCAYPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQLRKKREAERLSRLEEKEKNHIETRTRKFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDKKYSDGIEPLEDSEADLPESEKNGISKESPIDEDDMIDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWVNEFTTWVPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIQWKYLIVDEGHRLKNHESALARTLDNGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGEYDMYKRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPINKDDKSKDFNSAVTGKRKRKEVVYADTLSDLQWMKAVENGEDISKFSAKGKRRDHHSSDSIAQASDNTVAEESLELRTESVPMTNDRTSEDSFHVTPSSKRFKSEGTNFLKHTYEDVGSGLNHHVLSWNTHKKKRSSFLGQGSLSDARGHSSNGRANWN 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9078g00013 952 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 564 731 IPR001650 -
Vium9078g00013 952 MobiDBLite consensus disorder prediction 932 952 - -
Vium9078g00013 952 Pfam SNF2-related domain 253 541 IPR000330 GO:0005524|GO:0140658
Vium9078g00013 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 475 IPR027417 -
Vium9078g00013 952 PANTHER SNF2/RAD54 HELICASE FAMILY 49 850 - -
Vium9078g00013 952 Gene3D - 481 781 IPR027417 -
Vium9078g00013 952 Coils Coil 765 785 - -
Vium9078g00013 952 Coils Coil 53 73 - -
Vium9078g00013 952 CDD SF2_C_SNF 550 685 - -
Vium9078g00013 952 MobiDBLite consensus disorder prediction 840 872 - -
Vium9078g00013 952 SMART ultradead3 246 439 IPR014001 -
Vium9078g00013 952 SMART SnAC_2 767 827 IPR029295 GO:0042393
Vium9078g00013 952 FunFam Chromatin structure-remodeling complex protein SYD 241 484 - -
Vium9078g00013 952 Pfam Snf2-ATP coupling, chromatin remodelling complex 768 827 IPR029295 GO:0042393
Vium9078g00013 952 MobiDBLite consensus disorder prediction 188 219 - -
Vium9078g00013 952 FunFam Probable ATP-dependent DNA helicase CHR12 481 780 - -
Vium9078g00013 952 MobiDBLite consensus disorder prediction 172 221 - -
Vium9078g00013 952 Pfam Helicase conserved C-terminal domain 561 674 IPR001650 -
Vium9078g00013 952 Gene3D - 219 474 IPR038718 -
Vium9078g00013 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 728 IPR027417 -
Vium9078g00013 952 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 262 428 IPR014001 -
Vium9078g00013 952 SMART helicmild6 590 674 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9078g00013 Vium-Chr9078 103620 113851 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9078g00013 232 701 RAD5 or RAD16-like Gene Family AT1G02670 27.224 1.29e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium9078g00013 SNF2_N 1.8e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9078g00013 - - gmx:100786280 1827.76