Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9078g00012 ATGGAGAAGGAGAAGGAGAAGGAGACGCAGAATGAGCGCCACCACGCCAAGACACTCATCTGTGCCCTCAACCTTCTCTCGCGCGACCTCCCTCTCCCTCCTCATATTCTCAATTCCGTCTCTTCCATCTACCGCAATCATGATGATGGAGGTAATTCTGGAGAGGACTTGATATTGGATCTTGAAGATGCACTGTCGAAGCAGCGTCCAAACTGCGTGTCTGGTTTTAAACTAGAGAAAGCAAGGGAAAGTCGGTATCGAAGTCAGATTCAGCATCGATTGAATGATCTTCAAGAATTGCCTTCAAGCCGGGGAGAGGACCTGCAGACAAAATGCTTGCTTGAACTTTATGGACTAAAGCTTGCAGAGTTGCAGATGAAGGTTCGTACTGATGTGAGTTCTGAATACTGGCTCAATGCTAAGTGTGCTTATCCGGACAGGCAATTGTTTGATTGGGGCATGATGAGGCTGCGTCGTCCATTATATGGGGTTGGAGATCCATTTGCCATGGATGCTGATGATCAATTAAGGAAGAAACGGGAGGCCGAGAGACTATCAAGATTAGAAGAAAAGGAGAAAAATCATATAGAGACTAGAACAAGGAAATTTTTTGCAGAAATACTCAACACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGAGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGACAAAGACAACGAGCAACTCGGGCAGAGAAATTGAGGTTCCAAGCCTTGAAGGCTGATGATCAAGAAGCGTACATGAGAATGGTGAAAGAGAGTAAGAATGAGAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTAGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAAGACAAAAAGTATTCAGATGGTATTGAGCCATTGGAAGATTCTGAAGCAGATTTACCAGAGTCAGAAAAGAATGGAATTTCTAAGGAGTCACCTATTGATGAAGACGATATGATCGATTCTGATCATAATGGTGATTCCAGTGATTTACTTGAGGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTGACTGAGCAACCATCTATTCTTCAAGGTGGAGAGTTAAGACCATACCAGATAGAGGGGCTCCAGTGGATGCTTTCTTTGTTCAATAACAATTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACGATACAAACAATTTCGCTTATAGCATATCTTATGGAAAACAAGGGTGTTACCGGTCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCAAATTGGGTCAATGAATTCACAACATGGGTTCCTAGCATCACAGCTATTCTTTATGACGGACGGCTGGATGAGAGGAAGGCAATGAAGGAAGAGTTATCAGGGGAGGGGAAATTCAATGTTTTATTGACTCACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCAATGGAAGTACTTGATTGTGGATGAAGGGCACCGGTTGAAAAACCATGAGTCTGCTCTGGCAAGAACCTTGGACAATGGTTATCACATCCAACGAAGACTCCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTTTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCGGTTCAAAATTTCGAGGACTGGTTTAATGCCCCCTTTGCAGACCGAGTTGATGTCTCCCTCACCGATGAGGAACAACTATTGATCATCCGGCGCCTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAAGATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACAGATGTAGGCAGAGTTGGGTTGGACAACGGTTCTGGAAAGTCAAAAAGTCTACAAAATTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTATTCGTGGGAGAATATGATATGTATAAACGTAAGGAGGAGATTGTTAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTTATGGACATTCTTGAAATCTATTTACGACTTCATGATTTTAAGTATCTTAGACTTGATGGTTCAACAAAAACTGAGGAAAGAGGCAATCTTCTAAGGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGATAGCGATTGGAATCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGCATTGGACAGAAAAAGGAAGTTAGGGTTTTTGTTTTGGTTAGTGTAGGATCAATTGAAGAGGTGATTCTAGAGCGTGCAAAACAAAAAATGGGCATTGATGCCAAAGTTATCCAAGCAGGACTTTTCAACACAACTTCGACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGCAGAGGTACAAGCTCACTTGGGACAGATGTGCCGAGTGAGAGAGAAATTAACCGTCTTGCTGCCCGATCTGACGAGGAGTTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAATTACAGATCCCGTCTCATGGAAGAACACGAATTGCCAGATTGGGTATATTCTCCAATTAACAAGGATGATAAGTCCAAAGATTTCAACAGTGCTGTCACTGGAAAACGGAAAAGAAAAGAAGTGGTATACGCAGATACGTTGAGTGATCTGCAATGGATGAAGGCTGTGGAGAACGGAGAAGACATATCAAAGTTTTCAGCTAAAGGAAAAAGAAGAGACCACCACTCATCTGACAGCATTGCTCAAGCCAGCGATAACACAGTAGCAGAAGAAAGTTTAGAGTTGAGGACTGAAAGTGTTCCTATGACAAACGATCGCACGAGTGAAGATAGTTTCCATGTGACCCCTTCTTCAAAGAGATTCAAATCTGAAGGAACGAATTTCCTGAAACATACATACGAGGATGTTGGAAGTGGTTTGAACCACCATGTGTTATCATGGAATACTCACAAAAAGAAGAGGTCAAGTTTTCTGGGCCAGGGTTCATTATCTGATGCCAGAGGGCATTCTTCCAATGGAAGAGCAAACTGGAACTGA 3234 0.4208 MEKEKEKETQNERHHAKTLICALNLLSRDLPLPPHILNSVSSIYRNHDDGGNSGEDLILDLEDALSKQRPNCVSGFKLEKARESRYRSQIQHRLNDLQELPSSRGEDLQTKCLLELYGLKLAELQMKVRTDVSSEYWLNAKCAYPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQLRKKREAERLSRLEEKEKNHIETRTRKFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDKKYSDGIEPLEDSEADLPESEKNGISKESPIDEDDMIDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWVNEFTTWVPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIQWKYLIVDEGHRLKNHESALARTLDNGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGEYDMYKRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPINKDDKSKDFNSAVTGKRKRKEVVYADTLSDLQWMKAVENGEDISKFSAKGKRRDHHSSDSIAQASDNTVAEESLELRTESVPMTNDRTSEDSFHVTPSSKRFKSEGTNFLKHTYEDVGSGLNHHVLSWNTHKKKRSSFLGQGSLSDARGHSSNGRANWN 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9078g00012 1077 SMART SnAC_2 892 952 IPR029295 GO:0042393
Vium9078g00012 1077 MobiDBLite consensus disorder prediction 1057 1077 - -
Vium9078g00012 1077 Coils Coil 178 198 - -
Vium9078g00012 1077 PANTHER SNF2/RAD54 HELICASE FAMILY 118 975 - -
Vium9078g00012 1077 FunFam Chromatin structure-remodeling complex protein SYD 366 609 - -
Vium9078g00012 1077 Gene3D - 344 599 IPR038718 -
Vium9078g00012 1077 SMART helicmild6 715 799 IPR001650 -
Vium9078g00012 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 602 853 IPR027417 -
Vium9078g00012 1077 MobiDBLite consensus disorder prediction 297 346 - -
Vium9078g00012 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 600 IPR027417 -
Vium9078g00012 1077 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 689 856 IPR001650 -
Vium9078g00012 1077 FunFam Probable ATP-dependent DNA helicase CHR12 606 905 - -
Vium9078g00012 1077 SMART ultradead3 371 564 IPR014001 -
Vium9078g00012 1077 MobiDBLite consensus disorder prediction 313 344 - -
Vium9078g00012 1077 Gene3D - 606 906 IPR027417 -
Vium9078g00012 1077 Pfam Helicase conserved C-terminal domain 686 799 IPR001650 -
Vium9078g00012 1077 Pfam Snf2-ATP coupling, chromatin remodelling complex 893 952 IPR029295 GO:0042393
Vium9078g00012 1077 MobiDBLite consensus disorder prediction 965 997 - -
Vium9078g00012 1077 Pfam SNF2-related domain 378 666 IPR000330 GO:0005524|GO:0140658
Vium9078g00012 1077 Coils Coil 890 910 - -
Vium9078g00012 1077 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 387 553 IPR014001 -
Vium9078g00012 1077 CDD SF2_C_SNF 675 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9078g00012 Vium-Chr9078 102844 113851 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9078g00012 357 826 RAD5 or RAD16-like Gene Family AT1G02670 27.224 9.89e-36 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium9078g00012 SNF2_N 2.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9078g00012 - - gmx:100786280 2024.59