Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9078g00008 ATGGAAGGGGGCCATTCAAAGTCAAAAAAAGAAAAGATAACCGTTGGGATACACTGTCCAGCAGCAAGAAACCATCATTTTGAAAAACTCACAATCTGCTTCCTTCCTTCAAATATTGCATTCCTTCCACTCACGCCAACAACGCCACCCTCGCCAAACTTTAGCCACAACCACAATATGCAAGACTTTTTGGGCTCTCTTCGCCGCTCCCTGGTTTTCCGACCCGGGGGTGACGATGCTCCTTTTGCCGGAATCGCCGACAAGCTTGGCTCCGCCATTCGCAAATCGCGAATCGCGTTAAAACCTCCTCCTCCTCCCATCCGGTGGCGCAAGGGCGAGTTGATTGGTTCCGGTGCCTTCGGTCACGTCTACATGGGAATGAACCTCGATTCCGGGGAGCTTATTGCCATCAAACAGGTTTTAATCGCTCCTGGTAGCGCTTACAAGGAGAACACACAGGCTAATATTCGGGAGCTCGAAGAAGAAGTTAAGCTTCTCAAGAATCTTAAGCATCCAAATATTGTTAGATACTTGGGAACTGCGAGAGAGGAGAACTCCTTAAATATTCTGCTGGAGTTCGTACCCGGTGGTTCTATCTCATCACTTTTGGGGAAATTTGGATCCTTCCCCGAATCCGTTATAAGAATGTATACGAAACAGCTTTTACTGGGCCTTGAATATCTTCACAATAATGGGATTATTCACAGAGATATTAAGGGAGCCAACATTCTAGTTGATAACAAAGGGTGCATTAAACTTGCAGACTTTGGTGCATCCAAGAAAGTTGTTGAACTGGCTACTATTAACGGTGCAAAATCAATGAAGGGCACGCCACATTGGATGTCCCCTGAAGTTATTCTACAAACAGGACATACAATCTCCACTGATATATGGAGTGTTGCATGCACCGTGATAGAGATGGCCACAGGGAAGCCTCCATGGAGTCAACAGTATCCCCAAGAGGTTTCAGCTCTTTTCTATATTGGGACAACTAAATCTCATCCACCCATACCTGATCATCTGTCAGCTGAGGCCAAAGACTTTTTGCTGAAATGTTTCCACAAGGAACCAGATTTAAGGCCTTCTGCATCAGAGTTGTTACAGCATCCGTTCATCACCTCTGAATATCATGGATCTCATTCAATCTTACGCAATTCAATCAGGGATTCTTGCAATAAGATGGCAACATATGGAATGAACTCTAGAACCTTCTTGGATTCTGTCCAGGGATCAACTTGCACTGGCTTAAAGGATGTTTGTCAGATAGACAGCATAAAATTCTCAACTGTGTATCATAAAGCAGATTCCTACCAGAGAGCAGACAACCATGATGATGACATGTGTCTGATGGATGAAGATGATTTTTTGATTGGTTCACCAGTAAAATCTGCATCTCTATTAGCTTCTGATGATACGAAGAGTTGCAATCCTTCGAGCAAACCTGCGGATGATCATCCTTGCGATTTTAATGAAAGCCAATATTTAGAGAAAAACAGACCGCACTTATCATTTTCAAGTGAGCCTCTAGGAACTGAAGATGATGAAGAAGTTACTGAATGTAAAATTAGAGAGTTCCTTGATGATAAGGCACTTGAGCTGAAGAAGCTTCAAACACCTCTTTATGAAGAATTCTTAAGCATATCAAATGCAGCCATTGCTCCTACTCCCTTTGCAAAGAGTAAAGTTATGTCGGGTGTCCCAAATGTAACATCAAAACTCAGATCGCCTAGTCAGGCTTGGAGACGATTCTCAATGGTTGGCAGTGCTACTGTAGCAAGCCCTGGAAGTCATACCAAATACCGATCGAAGCATAATGGTGCTTACTGTCAACCTTTGCAGGAAATTCAGCCACCTAAGCTTAATGAATCAAAGGAGACTCTTCATGACGCTGAGCTGGAATCATCTAGTGTAAGCTCAAACTTCTCTGAGAGGCAAAGGAAATGGAAAGAAGAATTGGTTGAAGAGCTGGAGTGGAAGCGAGAGATGATGCGTCGGGCCGGAACTGGAGGAAAGATTACATCTCCAAAGGATCGCAGATTTTATGAAGACTGA 2052 0.4376 MEGGHSKSKKEKITVGIHCPAARNHHFEKLTICFLPSNIAFLPLTPTTPPSPNFSHNHNMQDFLGSLRRSLVFRPGGDDAPFAGIADKLGSAIRKSRIALKPPPPPIRWRKGELIGSGAFGHVYMGMNLDSGELIAIKQVLIAPGSAYKENTQANIRELEEEVKLLKNLKHPNIVRYLGTAREENSLNILLEFVPGGSISSLLGKFGSFPESVIRMYTKQLLLGLEYLHNNGIIHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPHWMSPEVILQTGHTISTDIWSVACTVIEMATGKPPWSQQYPQEVSALFYIGTTKSHPPIPDHLSAEAKDFLLKCFHKEPDLRPSASELLQHPFITSEYHGSHSILRNSIRDSCNKMATYGMNSRTFLDSVQGSTCTGLKDVCQIDSIKFSTVYHKADSYQRADNHDDDMCLMDEDDFLIGSPVKSASLLASDDTKSCNPSSKPADDHPCDFNESQYLEKNRPHLSFSSEPLGTEDDEEVTECKIREFLDDKALELKKLQTPLYEEFLSISNAAIAPTPFAKSKVMSGVPNVTSKLRSPSQAWRRFSMVGSATVASPGSHTKYRSKHNGAYCQPLQEIQPPKLNESKETLHDAELESSSVSSNFSERQRKWKEELVEELEWKREMMRRAGTGGKITSPKDRRFYED 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9078g00008 683 ProSiteProfiles Protein kinase domain profile. 109 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9078g00008 683 Pfam Protein kinase domain 110 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9078g00008 683 FunFam Serine/threonine-protein kinase STE11 106 199 - -
Vium9078g00008 683 CDD STKc_MAPKKK 108 372 - -
Vium9078g00008 683 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 84 385 - -
Vium9078g00008 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Vium9078g00008 683 Coils Coil 149 169 - -
Vium9078g00008 683 FunFam Mitogen-activated protein kinase kinase kinase 2 108 400 - -
Vium9078g00008 683 SMART serkin_6 109 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9078g00008 683 MobiDBLite consensus disorder prediction 468 491 - -
Vium9078g00008 683 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Vium9078g00008 683 Gene3D Transferase(Phosphotransferase) domain 1 108 403 - -
Vium9078g00008 683 SUPERFAMILY Protein kinase-like (PK-like) 108 373 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9078g00008 Vium-Chr9078 47119 56624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9078g00008 60 671 MAP Kinase Kinase Kinase AT3G06030 55.335 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium9078g00008 Pkinase 3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9078g00008 K20606 - gmx:100795863 1069.68