Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9078g00003 ATGTTCTCCCAAAATCTGATTCTCCCTCCCGAAAACCCTAGACAAGCGGCCTCGTTCGCCTCAAAACCCATGAGCAATGAGATCGCAATCGCTGCGCAGAAACCTCCTCCGTCGATTCTCGTTGGCCGCTTCAAGGCACTCCTCAAGCAGCGTGATGACGAACTCAGACTCGTCGCAGGCGTCCCCGTTCCGCCCCCGACAACAGATGAAATTGTCCAGATTTACGACCTCCTTTTGTCGGAACTCACCTGTAATTTGAAGCCTATCATCACCGATCTCACAATCATCGCCGAACAGCAGAGGGAGCACGCCAAAGGCATCGCTGATGCAATTTGCGCTCGGATTCTCGAGGTGGCGGCAGATCAAAAGCTCCCCTCACTCTATTTGTTGGACAGTATTGTGAAGAATTTTGGGCAGGAATACATTAAATACTTCTCTTTACGTCTGCCAGAAGTCTTTTGTGAGGCATACAGGCAGGTTCAGCCTAGTTTGCATCCTGCTATGCGGCATCTTTTTGGGACATGGTCAAAAGTTTTTCCCCCTTCTGTCCTACGCAAGATTGAAGCTGAATTGCAATTTTCCGCAGCAGTTAATACCCAATCATCCACCCTGAATGCTGTAAGGGCTTCTGAATCTCCGCGGCCTAGTCATGGCATACATGTTAATCCAAAATACCTGCGCCACTTGGATCACTCAACCGCCGATAGTGTTGGTGCTGAAAAGTTGGATTCATCAGGAAATGCCAATAATACAAACTTTGGCATTCTAGGCAGTAAGACACACCAAATTTTATCAGGCAGTGGCAGGCTGGGAATATCCTCTTCCCCTTCAAGAAGTGGACTTGATAGGCCTTTGTCTGCATCCATGGATGAGTATGCAGCTGACAGTTCTGCTAACAGATTAATTGAGAGAGACTCTTCTCATCCTGCTGTTGATTATGGAGTAGGCAAGGCAATAGGTAGAGATATGGAGTTGAGTGAATGGCAACGAAAGCAGTATGCTGGTGATGGTCGTAATAGGTTTCCAACTTCTATCACATACAGCCTTAGTAATGGACATCAGCGTCAAAGTCCCAGAGCTTTAATCGATGCATATGGCAGTGACAAAAGTCAAGAAAATTCAAGTACTAAGCGTTTGCTAGTAGAACGGGTTGATAGAAATGGTATAGACAACAAGGTATTGCCTACATCATGGCAGAATACCGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACCTTAACTGATCATAGTAGAAATAACAGTATATTGCCTTCAACTATTGGATTCACCAGGGAAAGGCCTGTTGTTGCAGCTAATGCCGCTTTGCCAGAGCATGATTCCAGAAAGGGGGTTTGGTCTAGTGGATCTCAGCTTCCTCCCGTGGATGATTCTTCTGCTGTAGCAGAAGATGCATTTGCTTCTTTGGGTTTTCGACGACCACCACTGGGACAGGTACCTGGATTCCAAAATCATGTCAATCATAGTCTGGGTTCTTCTCATCATCTGTCCAACTCGTCACAACATTTCTTTGGTAATAGGGGCCGGGCAAGAACTCTTACATTTCCTCCTATTGATAACATTCACAATCCCGATACAAATCCATATCGGGTTCGACCTGCAGTGTCAAGGATGGTTTCTGGCCGTGTCTCTAATGTGGAACCTAGACCATCAGTTTTGCCTGCAACTCTGCCTGCTGTAAATTTGAATGTCACTCGACCACCTGCATTAAATCCAATAACTCCATTACAAAAACATGTTAGGAGTCAGTTTGAAGCTTTACAGACTAGTAACCCTGTTGTGAATCATGTAAATAAATCTTCGTTTATGCCAGAGCAGTCATTTGACAGTGTTGAGAACAAGGATGCAAGTATTTTGAAGATAAATCAGTTGCCTAATCAGCTTCCTGGACTAATTTCGTCCAACCAGCAAAATCACAGGCAAGCACCACAACTGCAGTTTTTCCCACCATCTCAGGATTCGTCAAACTCACAATTTAGTCATGGGAGTTCTTTGCAGGGACATGGTGCTTCTATAAGTACTGCCATGTCGAATCCGTTACCTATTATGCAATTCCATTTGCCACTCCAAAATGTTGCAAATAACCCTTTACATTTACAGGGTGGAGCCCGGCCACCTTTACCTCCAGGTCGCCCTCTTGCTCCACCACAAATGATACCTCATCCAAATGCCAGTCCATTTATGTCAAGCCAACAGCCAACTGTTGGATATACTAATTTAATTAGTTCTCTAATGTCTCAAGGTGTGATCTCATTGGCCAACCAGCTGCCTACTCAGGATTCTGTTGGAACTGAGTTCAATCCAGATATTCTGAAGCTTCGTTATGAGTCTGCTGTCAATGCCTTGTATGGTGATCTCCCAAGACAATGCACAACTTGTGGACTCCGATTCAGATGCCAAGAGGAACACAGTAGTCATATGGATTGGCATGTGACAAAGAATCGGATGTCTAAAAGCCGGAAGCAGAAACCCTCTCGGAAGTGGTTTGTGAGTGACAGGATGTGGCTTAGTGGTGCAGAGGCATTGGGAACTGAGTCAGTTCCAGGTTTTTTGCCTACGGAAACCATAGAAGAAAAGATAGACGATGAAGAGTTGGCTGTTCCAGCAGAAGAGGATCAGAATACTTGTGCATTATGTGGAGAGCCTTTCGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGGGGAGCTGTATACCTCCATGCTCCCACGGGGACAACATCAGGCATGGACAGGTCACAGTTAGGCCCCATAATTCATGCTAAGTGCAGATCAGAATCTAATATGGCACCATCTGAAGATCTTGGGCCGGATGAAAAGGGTGGTGATGAAGAGGGTACCCAAAGGAAGCGAAGGCGTAGTTGA 2895 0.4549 MFSQNLILPPENPRQAASFASKPMSNEIAIAAQKPPPSILVGRFKALLKQRDDELRLVAGVPVPPPTTDEIVQIYDLLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVAADQKLPSLYLLDSIVKNFGQEYIKYFSLRLPEVFCEAYRQVQPSLHPAMRHLFGTWSKVFPPSVLRKIEAELQFSAAVNTQSSTLNAVRASESPRPSHGIHVNPKYLRHLDHSTADSVGAEKLDSSGNANNTNFGILGSKTHQILSGSGRLGISSSPSRSGLDRPLSASMDEYAADSSANRLIERDSSHPAVDYGVGKAIGRDMELSEWQRKQYAGDGRNRFPTSITYSLSNGHQRQSPRALIDAYGSDKSQENSSTKRLLVERVDRNGIDNKVLPTSWQNTEEEEFDWEDMSPTLTDHSRNNSILPSTIGFTRERPVVAANAALPEHDSRKGVWSSGSQLPPVDDSSAVAEDAFASLGFRRPPLGQVPGFQNHVNHSLGSSHHLSNSSQHFFGNRGRARTLTFPPIDNIHNPDTNPYRVRPAVSRMVSGRVSNVEPRPSVLPATLPAVNLNVTRPPALNPITPLQKHVRSQFEALQTSNPVVNHVNKSSFMPEQSFDSVENKDASILKINQLPNQLPGLISSNQQNHRQAPQLQFFPPSQDSSNSQFSHGSSLQGHGASISTAMSNPLPIMQFHLPLQNVANNPLHLQGGARPPLPPGRPLAPPQMIPHPNASPFMSSQQPTVGYTNLISSLMSQGVISLANQLPTQDSVGTEFNPDILKLRYESAVNALYGDLPRQCTTCGLRFRCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTESVPGFLPTETIEEKIDDEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLHAPTGTTSGMDRSQLGPIIHAKCRSESNMAPSEDLGPDEKGGDEEGTQRKRRRS 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9078g00003 964 MobiDBLite consensus disorder prediction 654 680 - -
Vium9078g00003 964 FunFam polyadenylation and cleavage factor homolog 4 64 192 - -
Vium9078g00003 964 SUPERFAMILY ENTH/VHS domain 67 191 IPR008942 -
Vium9078g00003 964 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 56 948 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vium9078g00003 964 CDD CID_Pcf11 75 192 IPR047415 -
Vium9078g00003 964 ProSitePatterns Zinc finger C2H2 type domain signature. 798 818 IPR013087 -
Vium9078g00003 964 SMART 558neu5 70 192 IPR006569 -
Vium9078g00003 964 MobiDBLite consensus disorder prediction 401 421 - -
Vium9078g00003 964 Gene3D - 65 193 IPR008942 -
Vium9078g00003 964 Pfam CID domain 86 186 IPR006569 -
Vium9078g00003 964 ProSiteProfiles CID domain profile. 67 195 IPR006569 -
Vium9078g00003 964 MobiDBLite consensus disorder prediction 933 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9078g00003 Vium-Chr9078 25568 33324 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9078g00003 737 964 C2H2 Transcription Factor Family AT4G04885 67.686 1.20e-100 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9078g00003 K14400 - gmx:100794796 1509.58