Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9078g00002 ATGAGTGAAAGGCAACAAATACAGTATTCTGAGTGTAATCAATTTTCAACTTCTATCACCTACAGCCCTAGTAATGGATATCAGCCTGAAATATTAAAAGCTTTAATTGATGCATATGGCAAAGAAGAAAGCCGAGAATGTCCAAGCAGTAAACCACTACTAGTTGAACAGATGCATGGAAACTGTATAGAGAATAAAGTGTGGTCAAAATCATGGCAGAATACAGAAGAGGAGGAGTTTGACTGGAAAGATTTGAAGTCAACCATTGTAGACCATAGCAGGAATAAAAGTACATTACCTTCAACCGGTTTTTTTTCCAGGGAAATACCTGTTGTTGCAGCTAGTGCAACTTTGTCAGAGCAAAATGCCAGCAAGGGTTGGTCTACTGGATCTCAGCTTCCTCTACTTCATGATTCCTCTGCTATGGCGATGAAGCATAGCCTGGTCTCCTCTCAATCTCATGATGCTATGAAGATTCCTCATCATCGCTATAACTCGTCTCAACGTATCTTTAGTAGAATGGGTCAATCAAGGACTCTTACGAACACTCCAATTAATCACATTCCCAAAAGTTATGAAAACCCAAATGGGGTTCGACATGCAGTGCCGATAATGGCTTCTGGCATTCCCTCTAATGTGAAACCTCCACCATCACTTGTGCTTGCAGCTTCTGAAACAAGGCCTTCTGTAAATCAGAATGTCACTCGATCTCCTACTATGAAGCATGCTGTAAATAACTCTATGATTGTACCAGCACAGTCAGGTGGCGCCTTTGAGAAGAAGGATGCATATACTACACATATGCATCAGTTTCCTGAGAAACTTCCTGGCCAAGTTTCTTCCAACCAGAAAAATCACTGGAAAGCACCACAGCCCAAGTTTTTTCCATCTCAGGATCCATCAACCAAACAGTTTGGTCATGGGATGGATTTTTTGAAGAGATCTGGTGCATCCACAAGTACAACCATGTCGAATACGTTACCTACTGTGCTATTCCCTTCACCACTTCCAAGTATTGCAAACTACCCTTTTCATCCAGGTCACCCTCCTGCTTCATCTCAAATGATGATACCTCATTCGAATGTTGGTCCGTTTATGTCAAGCAAACAGCCACCAGATACTGATCAAATTTTTCATGCTGACATCTCATCGGATAAACTACTGCCACCACAGAATTCCATCGGAACCGAGTTTAAAGCAGACATTCTGAAGGTTCGGCATGAGTCTGTAATTAATGGCTTGTATGGTGATCTCCCTAGACAATGCAGAAGTTGTGGGCTGAGATTCAGAAGCCAAGAGGAACACAGAAGTCACATGGATTGGCATGTGACCAAGAATCGGAAGCAGAGAATCTGTCGTGAATGGTTTGTGAGGGAGAGGATGTGGCTTAGTGGTGCAGAGGCAGTGGGAACGAAGTCAGTAGCAGCTTTTTTTCCGACAGAAAGAAAAGAAGAAACGAAAGATGAACAAGAGTTGGCGGTGGTAGCAGAAGAGGAGCAGAAAAGATGTGCATTGTGTGAAGAGGCTTTTGAGGAGTTTTACAGTGATGAAATGGAGGAGTGGATGTATAGAGGAGCTGCGTACCTGTATCAACCCACAGAAAAATTAGCAACAAGCATGGAGAGGTCACAGTTAGGTCCCATAATTCATGCTAAATGCAGATCAGATCTTAAAATGCCTCTCTCCAAACATCTTCCAGAGGATGATTACCAAGAGGGTACCCCAAGTAAACGAATGCGGATTTGA 1746 0.4273 MSERQQIQYSECNQFSTSITYSPSNGYQPEILKALIDAYGKEESRECPSSKPLLVEQMHGNCIENKVWSKSWQNTEEEEFDWKDLKSTIVDHSRNKSTLPSTGFFSREIPVVAASATLSEQNASKGWSTGSQLPLLHDSSAMAMKHSLVSSQSHDAMKIPHHRYNSSQRIFSRMGQSRTLTNTPINHIPKSYENPNGVRHAVPIMASGIPSNVKPPPSLVLAASETRPSVNQNVTRSPTMKHAVNNSMIVPAQSGGAFEKKDAYTTHMHQFPEKLPGQVSSNQKNHWKAPQPKFFPSQDPSTKQFGHGMDFLKRSGASTSTTMSNTLPTVLFPSPLPSIANYPFHPGHPPASSQMMIPHSNVGPFMSSKQPPDTDQIFHADISSDKLLPPQNSIGTEFKADILKVRHESVINGLYGDLPRQCRSCGLRFRSQEEHRSHMDWHVTKNRKQRICREWFVRERMWLSGAEAVGTKSVAAFFPTERKEETKDEQELAVVAEEEQKRCALCEEAFEEFYSDEMEEWMYRGAAYLYQPTEKLATSMERSQLGPIIHAKCRSDLKMPLSKHLPEDDYQEGTPSKRMRI 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9078g00002 581 ProSitePatterns Zinc finger C2H2 type domain signature. 422 442 IPR013087 -
Vium9078g00002 581 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 8 558 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vium9078g00002 581 MobiDBLite consensus disorder prediction 562 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9078g00002 Vium-Chr9078 19191 21294 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9078g00002 323 580 C2H2 Transcription Factor Family AT4G04885 45.263 4.09e-68 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9078g00002 K14400 - gmx:100794796 583.178