Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9078g00001 ATGTATCAGTACAACACCAACTCTTGGAATTCTCAACAACAACAACAACAGTCTATACTAGAAAAGCCTCCACAAAGGACATTCTTGGAGAACGAATTGGGAAGGAACATAGATGGCGAATCTTCTAGTAATGAAAGGAGAGTTCCTTCTTCCTCTGACCGAGATCCCAACAAACAAAGTGGGAAAAAGCGTTACCATCGACACACGCATGAACAGATCATGGAGATGGAATGTTTCTTTAAGGAGTGTCCTCACCCAGATGACAGACAAAGGAGAGAGCTGAGCAGAGAGCTGGGATTGGATATCTTGCAGGTCAAGTTCTGGTTCCAAAACAAGCGTACCCAAGTGAAGTCTCAACATGATCGCCACGAGAACAATCTTTTAAAGGCTGAGAATGACAAGCTTCGTGCAGAGAACACCAGGTACAAGGAGGCACTAAGTCATGCTTCTTGCCCTAATTGTGGAGGCCTCAGTGGAGAAATGTCCTTTGACGAGCAACAGCTGAGGACTGAGAATATGCGATTGAGAGAAGAGATTGAAAAGATGTCAGCAATGATACCAAGATTTGCTGTAAAACCTGGGAGTTTATATCATAACATGTCATCTCAAAACCAGATGATTCCTCCTCCGTCCCTTGATCAGGGTGTTGGAAACTATGGAGCACATACAGTTATCACAGGGGAAATGTTTGGTGCCAATAATGAACCCCTTGGGGCACTCCCAATTGCTAATGATTTTGAGAAAGACATCGTTATGGAGATTGGTAGCGTAGCAATGAAGGAATTCACAAACCTCGCCGAGGCTGGAAACCCTTTGTGGCTCCCTGGAAGCTGTGGCTGTGAGATTCTGAACCAGGATGAATATCTGAGATCTTTCCCTAAGGGAATAGGTCCAACACCCTTAGACGTAAAAATTGAAGCTTCAAGGCAGTCCGCAGTGGTAATCATGGATTACAATAAACTCGTTGAGATCTTTATGGATGTGAATCAATGGGCAAACATGTTTTGCGGTATCATTTCAAGGGCGGCGATACATCAAGTGCTGGAAGTTGGCCAAACAGAAATCTTGGACGGAGCCTGTCAAGTGATGTCAGCTGAGTTTCAAGTCCCTTCACCGCTTGTTCCCGTTCGTGATGACTATTTTGTCAGGTTCTGTAAGAGAAAAAACTTAGAATCATGGACTATTGTTGATTTTTCCATGGATCAGCTGCGACCCGGTTCATTCACAAAAAGCCGAAGACGACCCTCTGGTTGCCTAATCACAGAATTGCCAAATGGTTACTCAAAGATTGTTTGGATTGAACATATAGAACTGGAAGATAATGAAGTGCATGATCTTTACAAAAGCTATGTTAATTCTGGCCTCGCCTTTGGAGCTAAACGCTGGGTGGCATCCTTGGATAGACAATGCGAACGTCTTGCAAGTTCAATGGCCACGAACATACCCCATAAGAGCATTGGTGTGCTAACAAATTCTGGAGGACGAAGAAGTATGATGAGGCTGGCCGAAAGAATGATGTTGAGCTTTTGTACTGCTGTTGGTGCATCTACTGCAAATGCTTGGACACTAATAACAGATGCCAGTGAAGATGTAAGGGTCATGACCAGAAAAAGTGTGGATGATCCAGGAAGACCTTCCGGCATTGTGCTCAGTGCTTCAACTTCTTTGTGGCTCCCAATTCCTTCAAGGACAGTTTTTGATTTTCTGCGATCTGAAAACTCAAGAAATCAGTGGGACATTCTCTCTAACGGAGGACAAGTGGAAGAATTGGCACACATTGCCAATGGTCATGATACTGGCAACTGTGTCTCCTTGCTTCGAGTCAACACTCCGAATTTCGGCCAAAGCAATATGACTATGCTTCAAGAGACGTGCACTGATGCCACAGGCTCGTTTGTTGTGTATGCTCCTGTTGATTTAATTTCCATGAATGCTGTGTTGAGAGGTGGAAATCCTGATTGTGTTGCCCTGCTGCCCTCGGGCTTTGCTGTTCTTCCTGATGGGCCTGAACCGATGAACAACGGAGGACCCATTCGTGAGGTTGGATCTGGAGGTTGCCTTCTAACAGTGGCATTTCAGATATTGGTTGATTCTGTTCCAACTTCAAAACTCTCTGCTACTTCAGTGACCACTGTTAGCAGTTTAATCAAGTGCATAGTTGAGCGGATCCAAGCCGTAGTATGCAGTGGCGGCACTTAG 2199 0.4479 MYQYNTNSWNSQQQQQQSILEKPPQRTFLENELGRNIDGESSSNERRVPSSSDRDPNKQSGKKRYHRHTHEQIMEMECFFKECPHPDDRQRRELSRELGLDILQVKFWFQNKRTQVKSQHDRHENNLLKAENDKLRAENTRYKEALSHASCPNCGGLSGEMSFDEQQLRTENMRLREEIEKMSAMIPRFAVKPGSLYHNMSSQNQMIPPPSLDQGVGNYGAHTVITGEMFGANNEPLGALPIANDFEKDIVMEIGSVAMKEFTNLAEAGNPLWLPGSCGCEILNQDEYLRSFPKGIGPTPLDVKIEASRQSAVVIMDYNKLVEIFMDVNQWANMFCGIISRAAIHQVLEVGQTEILDGACQVMSAEFQVPSPLVPVRDDYFVRFCKRKNLESWTIVDFSMDQLRPGSFTKSRRRPSGCLITELPNGYSKIVWIEHIELEDNEVHDLYKSYVNSGLAFGAKRWVASLDRQCERLASSMATNIPHKSIGVLTNSGGRRSMMRLAERMMLSFCTAVGASTANAWTLITDASEDVRVMTRKSVDDPGRPSGIVLSASTSLWLPIPSRTVFDFLRSENSRNQWDILSNGGQVEELAHIANGHDTGNCVSLLRVNTPNFGQSNMTMLQETCTDATGSFVVYAPVDLISMNAVLRGGNPDCVALLPSGFAVLPDGPEPMNNGGPIREVGSGGCLLTVAFQILVDSVPTSKLSATSVTTVSSLIKCIVERIQAVVCSGGT 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9078g00001 732 SUPERFAMILY Homeodomain-like 48 119 IPR009057 -
Vium9078g00001 732 Pfam Homeodomain 62 117 IPR001356 GO:0003677
Vium9078g00001 732 SMART START_1 253 472 IPR002913 GO:0008289
Vium9078g00001 732 SUPERFAMILY Bet v1-like 245 474 - -
Vium9078g00001 732 Pfam START domain 258 472 IPR002913 GO:0008289
Vium9078g00001 732 Gene3D - 45 135 - -
Vium9078g00001 732 ProSiteProfiles START domain profile. 244 475 IPR002913 GO:0008289
Vium9078g00001 732 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Vium9078g00001 732 SUPERFAMILY Bet v1-like 494 724 - -
Vium9078g00001 732 MobiDBLite consensus disorder prediction 1 24 - -
Vium9078g00001 732 CDD START_ArGLABRA2_like 248 471 - -
Vium9078g00001 732 MobiDBLite consensus disorder prediction 39 60 - -
Vium9078g00001 732 FunFam Homeobox-leucine zipper protein HDG1 50 135 - -
Vium9078g00001 732 MobiDBLite consensus disorder prediction 1 68 - -
Vium9078g00001 732 CDD homeodomain 62 120 IPR001356 GO:0003677
Vium9078g00001 732 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Vium9078g00001 732 Coils Coil 165 185 - -
Vium9078g00001 732 Coils Coil 113 145 - -
Vium9078g00001 732 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 59 727 IPR042160 -
Vium9078g00001 732 SMART HOX_1 61 123 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9078g00001 Vium-Chr9078 8651 14852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9078g00001 54 731 Homeobox Transcription Factor Family AT4G21750 60.649 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium9078g00001 START 2.6e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9078g00001 K09338 - gmx:100793758 910.212