Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9076g00005 ATGGCGGCATCACCTGGCTCTATTTTGAATACTTCATCACCCCGTTCAACAAATGCAAAATCTGGCTTGTCAATCTCTCATACTACTCTATCTGGGGAAATTACAGGAGACCTACATTTTGGCAGAGAAGCAGGCACTATAGAGATGCTGAAGGATTCCACGGAATCCCTTAATTATACTAAGAGGTCATGGTCTAATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTCTAATTGGCAGCAAGATTGTCACCAATGCTTCCTCACGTGAAAGTAGTCTATTTTCAAGCTCCCTGTCTGAGGTTTTTAGCCAAAAGATGAGGTTATTGGGGAATGGAGTGCCATCTGGTCAACCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCATATAAATCTCTGGGAGAAATTGAGGCTGACACTATTGGAAATCTCCTTCCTGATGAAGATGACCTTTTTTCTGGAGTCACTAACGAGTTAGGATGCAGTACTCGGGCTAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGATGAACTTCTAATTTCTGGAAAGGGAACCAGTTTCATTTATGAAGATCCTGATTACTTTGGAGCCTCTAAAGGAAAACTTCCTTTTGGTGAACAATCTTCAAGAACACTTTTTGTTAGAAACATCAATAGCAATGTTGAAGACTCTGAACTTAAGGCTCTCTTTGAGCAATATGGAGACATTCGAACCATATACACTGCCTGCAAGCATCGTGGGTTTGTTATGATTTCATATTATGATCTAAGGGCATCACAAAATGCAATGAAGGCACTTCAAAATAGGTCATTGAGATTTAGGAAACTAGATATACATTACTCAATTCCAAAGGGCAATGCTCCAGAGAAAGATATTGGCCATGGTACACTGATGATATCTGATCTTGATTCATCTGTTTTGAATGATGAACTTAAACAGATATTTGGATTTTATGGAGAAATTAGAGATATCTTTGAATATCCTCAATTGAATCACGTCAAATTTATCGAATTTTATGATGTTCGAGCTGCAGAAGCTTCTCTTCGTGCACTGAATGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAGCCCGGACATCCCATGATTGCAACATGTATGATGCAGCAGTCTCAGAAGGGACAAGATGATCCTGATCTTGGTCATAGTCTTAGTGACAACATCTCCTTAAGACATAAGGCAGGAGTGTCATCTGGATTTATTGCATCTGCTGGCAGCTTGGAAAATGGATATAATCAAGGATTTCATTCTGCAGCACAGTTACCTGCTTTCATTGATAACTCACTATTTAATATGAATTCTAACATTCACAAGACAGCAAGAGGGGCATCTACTGGAAAAGTATCTGGTGTTTTTGAGGCCAGTAACACTATTGATTCTATGAAATTTGCATCTGTTTCGAGGTTCCATCCTCATTCTTTACCTGAATATCGCGATAGTTTAGCTAATGGAAGTCCTTACAACTATTCAAGTACCATTAACATGGCTGCCAATATTGGAAATGGATCAACGGAATCATCTGAGAGCAGGCACATTCAGGGAATAAACTCAACTGGGAACCTTGCAGAGTTTAATGCAGGAGGAAATGGAAACCGCTCCAATCATGGACTTTATCATATGTGGAATGGCTCCAACTTGCATCAACAACCTCCTTCAAATGCCATTCTTTGGCAGAAAACATCATCCTTTGTTAATGGTGCTGGTTCTCCATGTCTTCCACAGATACCCAGCTTTCCTAGAACACCTCCCCATGTGCTGAGAGCATCACATATAGACCATCAAGTGGGATCAGCACCCGTTGTTACAGCCTCACCATGGGAAAGACAACATTCTTACTTGGGAGAGTCACCGGATGGTTCTGGTTTTAGATTGGGTTCTGTGGGAAGCCCCGGCTTTCATGGTAGCTGGCAGATGCATCCTCCTGCTTCTCACAGCATATTTTCTCATGTTAGTGGGAATGGTACAGAATTGACATCAAATACTGGGCAGGGCTCTCCTAAGCAGTTATCACATGTTTTACCTGGGAGACTTCCCATGAATTTGGTTTCTAAATTTGATTCTAGCAATGAACGCCTGAGAAACCTCTATCCTCGAAGAAATGAACCAAACACTAACAGCAATGCAGATAAGAAACAATATGAACTTGACCTAGGTCGCATATTGCGTGGGGATGACAGCCGAACAACCCTCATGATAAAGAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATTGATGAACAATGTCGAGGAACATATGATTTTTTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATTATTCCATTCCACAAGGCCTTTAACGGAAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTACTCGCATATGCCCGAATTCAAGGAAAAGGTGCTCTCATTGCTCATTTTCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGCGATCCGGAGCCTTTCCCATTGGGTAACAATATTAGAGTGAGGCCTGGGAAATCTCGCGCAAATGGTAGCGAGGAGAATCGCAGCCAAGGGAATCCTTCATCTTTTGCAAGTGGTGAAGAGTCTGGGAATGGAATGGAATCATCTTCGATCTCTTCAAAAAACTCTGACTGA 2775 0.4133 MAASPGSILNTSSPRSTNAKSGLSISHTTLSGEITGDLHFGREAGTIEMLKDSTESLNYTKRSWSNVHRQPASSSYGLIGSKIVTNASSRESSLFSSSLSEVFSQKMRLLGNGVPSGQPITVGSLPEEEPYKSLGEIEADTIGNLLPDEDDLFSGVTNELGCSTRARMNDDFEDFDLFSSSGGMELEGDDELLISGKGTSFIYEDPDYFGASKGKLPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRASQNAMKALQNRSLRFRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLNDELKQIFGFYGEIRDIFEYPQLNHVKFIEFYDVRAAEASLRALNGICFAGKHIKLEPGHPMIATCMMQQSQKGQDDPDLGHSLSDNISLRHKAGVSSGFIASAGSLENGYNQGFHSAAQLPAFIDNSLFNMNSNIHKTARGASTGKVSGVFEASNTIDSMKFASVSRFHPHSLPEYRDSLANGSPYNYSSTINMAANIGNGSTESSESRHIQGINSTGNLAEFNAGGNGNRSNHGLYHMWNGSNLHQQPPSNAILWQKTSSFVNGAGSPCLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDGSGFRLGSVGSPGFHGSWQMHPPASHSIFSHVSGNGTELTSNTGQGSPKQLSHVLPGRLPMNLVSKFDSSNERLRNLYPRRNEPNTNSNADKKQYELDLGRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHKAFNGKKWEKFNSEKVAVLAYARIQGKGALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKSRANGSEENRSQGNPSSFASGEESGNGMESSSISSKNSD 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9076g00005 924 CDD RRM3_MEI2_like 751 836 IPR034454 -
Vium9076g00005 924 Gene3D - 218 306 IPR012677 -
Vium9076g00005 924 FunFam MEI2-like protein 5 isoform 2 213 307 - -
Vium9076g00005 924 SUPERFAMILY RNA-binding domain, RBD 221 378 IPR035979 GO:0003676
Vium9076g00005 924 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 382 IPR000504 GO:0003723
Vium9076g00005 924 MobiDBLite consensus disorder prediction 890 924 - -
Vium9076g00005 924 FunFam Protein MEI2-like 1 308 402 - -
Vium9076g00005 924 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 376 IPR000504 GO:0003723
Vium9076g00005 924 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 289 IPR000504 GO:0003723
Vium9076g00005 924 Gene3D - 307 403 IPR012677 -
Vium9076g00005 924 Pfam RNA recognition motif 2 748 844 IPR007201 -
Vium9076g00005 924 MobiDBLite consensus disorder prediction 859 924 - -
Vium9076g00005 924 SUPERFAMILY RNA-binding domain, RBD 750 834 IPR035979 GO:0003676
Vium9076g00005 924 CDD RRM1_MEI2_like 223 298 IPR034453 -
Vium9076g00005 924 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 297 IPR000504 GO:0003723
Vium9076g00005 924 PANTHER RNA RECOGNITION MOTIF-CONTAINING 65 919 - -
Vium9076g00005 924 SMART rrm1_1 225 293 IPR000504 GO:0003723
Vium9076g00005 924 SMART rrm1_1 310 378 IPR000504 GO:0003723
Vium9076g00005 924 SMART rrm1_1 750 828 IPR000504 GO:0003723
Vium9076g00005 924 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9076g00005 Vium-Chr9076 66275 74630 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9076g00005 219 375 Eukaryotic Initiation Factors Gene Family AT3G16380 24.719 1.65e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9076g00005 - - gmx:100797616 1612.82