Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9076g00004 ATGCCTTCTGAAATAATGGAGAAGAGGGGTGTGTCTGCCTCATCCCACTTTTTGGATGACATTTCCTATGCTTCTGAGAAGAATATTGGATTACGGAAGCCAAAATCTCTTCATGACCATTTTCTACAGGGCAAGAGTGAAATGGCGGCATCACCTGGCTCTATTTTGAATACTTCATCACCCCGTTCAACAAATGCAAAATCTGGCTTGTCAATCTCTCATACTACTCTATCTGGGGAAATTACAGGAGACCTACATTTTGGCAGAGAAGCAGGCACTATAGAGATGCTGAAGGATTCCACGGAATCCCTTAATTATACTAAGAGGTCATGGTCTAATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTCTAATTGGCAGCAAGATTGTCACCAATGCTTCCTCACGTGAAAGTAGTCTATTTTCAAGCTCCCTGTCTGAGGTTTTTAGCCAAAAGATGAGGTTATTGGGGAATGGAGTGCCATCTGGTCAACCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCATATAAATCTCTGGGAGAAATTGAGGCTGACACTATTGGAAATCTCCTTCCTGATGAAGATGACCTTTTTTCTGGAGTCACTAACGAGTTAGGATGCAGTACTCGGGCTAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGATGAACTTCTAATTTCTGGAAAGGGAACCAGTTTCATTTATGAAGATCCTGATTACTTTGGAGCCTCTAAAGGAAAACTTCCTTTTGGTGAACAATCTTCAAGAACACTTTTTGTTAGAAACATCAATAGCAATGTTGAAGACTCTGAACTTAAGGCTCTCTTTGAGCAATATGGAGACATTCGAACCATATACACTGCCTGCAAGCATCGTGGGTTTGTTATGATTTCATATTATGATCTAAGGGCATCACAAAATGCAATGAAGGCACTTCAAAATAGGTCATTGAGATTTAGGAAACTAGATATACATTACTCAATTCCAAAGGGCAATGCTCCAGAGAAAGATATTGGCCATGGTACACTGATGATATCTGATCTTGATTCATCTGTTTTGAATGATGAACTTAAACAGATATTTGGATTTTATGGAGAAATTAGAGATATCTTTGAATATCCTCAATTGAATCACGTCAAATTTATCGAATTTTATGATGTTCGAGCTGCAGAAGCTTCTCTTCGTGCACTGAATGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAGCCCGGACATCCCATGATTGCAACATGTATGATGCAGCAGTCTCAGAAGGGACAAGATGATCCTGATCTTGGTCATAGTCTTAGTGACAACATCTCCTTAAGACATAAGGGAGTGTCATCTGGATTTATTGCATCTGCTGGCAGCTTGGAAAATGGATATAATCAAGGATTTCATTCTGCAGCACAGTTACCTGCTTTCATTGATAACTCACTATTTAATATGAATTCTAACATTCACAAGACAGCAAGAGGGGCATCTACTGGAAAAGTATCTGGTGTTTTTGAGGCCAGTAACACTATTGATTCTATGAAATTTGCATCTGTTTCGAGGTTCCATCCTCATTCTTTACCTGAATATCGCGATAGTTTAGCTAATGGAAGTCCTTACAACTATTCAAGTACCATTAACATGGCTGCCAATATTGGAAATGGATCAACGGAATCATCTGAGAGCAGGCACATTCAGGGAATAAACTCAACTGGGAACCTTGCAGAGTTTAATGCAGGAGGAAATGGAAACCGCTCCAATCATGGACTTTATCATATGTGGAATGGCTCCAACTTGCATCAACAACCTCCTTCAAATGCCATTCTTTGGCAGAAAACATCATCCTTTGTTAATGGTGCTGGTTCTCCATGTCTTCCACAGATACCCAGCTTTCCTAGAACACCTCCCCATGTGCTGAGAGCATCACATATAGACCATCAAGTGGGATCAGCACCCGTTGTTACAGCCTCACCATGGGAAAGACAACATTCTTACTTGGGAGAGTCACCGGATGGTTCTGGTTTTAGATTGGGTTCTGTGGGAAGCCCCGGCTTTCATGGTAGCTGGCAGATGCATCCTCCTGCTTCTCACAGCATATTTTCTCATGTTAGTGGGAATGGTACAGAATTGACATCAAATACTGGGCAGGGCTCTCCTAAGCAGTTATCACATGTTTTACCTGGGAGACTTCCCATGAATTTGGTTTCTAAATTTGATTCTAGCAATGAACGCCTGAGAAACCTCTATCCTCGAAGAAATGAACCAAACACTAACAGCAATGCAGATAAGAAACAATATGAACTTGACCTAGGTCGCATATTGCGTGGGGATGACAGCCGAACAACCCTCATGATAAAGAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATTGATGAACAATGTCGAGGAACATATGATTTTTTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATTATTCCATTCCACAAGGCCTTTAACGGAAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTACTCGCATATGCCCGAATTCAAGGAAAAGGTGCTCTCATTGCTCATTTTCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGCGATCCGGAGCCTTTCCCATTGGGTAACAATATTAGAGTGAGGCCTGGGAAATCTCGCGCAAATGGTAGCGAGGAGAATCGCAGCCAAGGGAATCCTTCATCTTTTGCAAGTGGTGAAGAGTCTGGGAATGGAATGGAATCATCTTCGATCTCTTCAAAAAACTCTGACTGA 2913 0.4133 MPSEIMEKRGVSASSHFLDDISYASEKNIGLRKPKSLHDHFLQGKSEMAASPGSILNTSSPRSTNAKSGLSISHTTLSGEITGDLHFGREAGTIEMLKDSTESLNYTKRSWSNVHRQPASSSYGLIGSKIVTNASSRESSLFSSSLSEVFSQKMRLLGNGVPSGQPITVGSLPEEEPYKSLGEIEADTIGNLLPDEDDLFSGVTNELGCSTRARMNDDFEDFDLFSSSGGMELEGDDELLISGKGTSFIYEDPDYFGASKGKLPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRASQNAMKALQNRSLRFRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLNDELKQIFGFYGEIRDIFEYPQLNHVKFIEFYDVRAAEASLRALNGICFAGKHIKLEPGHPMIATCMMQQSQKGQDDPDLGHSLSDNISLRHKGVSSGFIASAGSLENGYNQGFHSAAQLPAFIDNSLFNMNSNIHKTARGASTGKVSGVFEASNTIDSMKFASVSRFHPHSLPEYRDSLANGSPYNYSSTINMAANIGNGSTESSESRHIQGINSTGNLAEFNAGGNGNRSNHGLYHMWNGSNLHQQPPSNAILWQKTSSFVNGAGSPCLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDGSGFRLGSVGSPGFHGSWQMHPPASHSIFSHVSGNGTELTSNTGQGSPKQLSHVLPGRLPMNLVSKFDSSNERLRNLYPRRNEPNTNSNADKKQYELDLGRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHKAFNGKKWEKFNSEKVAVLAYARIQGKGALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKSRANGSEENRSQGNPSSFASGEESGNGMESSSISSKNSD 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9076g00004 970 MobiDBLite consensus disorder prediction 905 970 - -
Vium9076g00004 970 Gene3D - 354 450 IPR012677 -
Vium9076g00004 970 Gene3D - 265 353 IPR012677 -
Vium9076g00004 970 Pfam RNA recognition motif 2 794 890 IPR007201 -
Vium9076g00004 970 FunFam MEI2-like protein 5 isoform 2 260 354 - -
Vium9076g00004 970 CDD RRM1_MEI2_like 270 345 IPR034453 -
Vium9076g00004 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 336 IPR000504 GO:0003723
Vium9076g00004 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 358 423 IPR000504 GO:0003723
Vium9076g00004 970 SUPERFAMILY RNA-binding domain, RBD 796 880 IPR035979 GO:0003676
Vium9076g00004 970 MobiDBLite consensus disorder prediction 50 69 - -
Vium9076g00004 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 344 IPR000504 GO:0003723
Vium9076g00004 970 SMART rrm1_1 272 340 IPR000504 GO:0003723
Vium9076g00004 970 SMART rrm1_1 796 874 IPR000504 GO:0003723
Vium9076g00004 970 SMART rrm1_1 357 425 IPR000504 GO:0003723
Vium9076g00004 970 CDD RRM3_MEI2_like 797 882 IPR034454 -
Vium9076g00004 970 PANTHER RNA RECOGNITION MOTIF-CONTAINING 45 965 - -
Vium9076g00004 970 FunFam Protein MEI2-like 1 355 449 - -
Vium9076g00004 970 MobiDBLite consensus disorder prediction 49 69 - -
Vium9076g00004 970 SUPERFAMILY RNA-binding domain, RBD 268 425 IPR035979 GO:0003676
Vium9076g00004 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 356 429 IPR000504 GO:0003723
Vium9076g00004 970 MobiDBLite consensus disorder prediction 936 970 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9076g00004 Vium-Chr9076 66275 74630 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9076g00004 266 422 Eukaryotic Initiation Factors Gene Family AT3G16380 24.719 1.55e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9076g00004 - - gmx:100797616 1689.86