LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium9076g00001	ATGCCTTCTGAAATAATGGAGAAGAGGGGTGTGTCTGCCTCATCCCACTTTTTGGATGACATTTCCTATGCTTCTGAGAATATTGGATTACGGAAGCCAAAATCTCTTCATGACCATTTTCTACAGGGCAAGAGTGAAATGGCGGCATCACCTGGCTCTATTTTGAATACTTCATCACCCCGTTCAACAAATGCAAAATCTGGCTTGTCAATCTCTCATACTACTCTATCTGGGGAAATTACAGGAGACCTACATTTTGGCAGAGAAGCAGGCACTATAGAGATGCTGAAGGATTCCACGGAATCCCTTAATTATACTAAGAGGTCATGGTCTAATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTCTAATTGGCAGCAAGATTGTCACCAATGCTTCCTCACGTGAAAGTAGTCTATTTTCAAGCTCCCTGTCTGAGGTTTTTAGCCAAAAGATGAGGTTATTGGGGAATGGAGTGCCATCTGGTCAACCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCATATAAATCTCTGGGAGAAATTGAGGCTGACACTATTGGAAATCTCCTTCCTGATGAAGATGACCTTTTTTCTGGAGTCACTAACGAGTTAGGATGCAGTACTCGGGCTAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGATGAACTTCTAATTTCTGGAAAGGGAACCAGTTTCATTTATGAAGATCCTGATTACTTTGGAGCCTCTAAAGGAAAACTTCCTTTTGGTGAACAATCTTCAAGAACACTTTTTGTTAGAAACATCAATAGCAATGTTGAAGACTCTGAACTTAAGGCTCTCTTTGAGCAATATGGAGACATTCGAACCATATACACTGCCTGCAAGCATCGTGGGTTTGTTATGATTTCATATTATGATCTAAGGGCATCACAAAATGCAATGAAGGCACTTCAAAATAGGTCATTGAGATTTAGGAAACTAGATATACATTACTCAATTCCAAAGGGCAATGCTCCAGAGAAAGATATTGGCCATGGTACACTGATGATATCTGATCTTGATTCATCTGTTTTGAATGATGAACTTAAACAGATATTTGGATTTTATGGAGAAATTAGAGATATCTTTGAATATCCTCAATTGAATCACGTCAAATTTATCGAATTTTATGATGTTCGAGCTGCAGAAGCTTCTCTTCGTGCACTGAATGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAGCCCGGACATCCCATGATTGCAACATGTATGATGCAGCAGTCTCAGAAGGGACAAGATGATCCTGATCTTGGTCATAGTCTTAGTGACAACATCTCCTTAAGACATAAGGCAGGAGTGTCATCTGGATTTATTGCATCTGCTGGCAGCTTGGAAAATGGATATAATCAAGGATTTCATTCTGCAGCACAGTTACCTGCTTTCATTGATAACTCACTATTTAATATGAATTCTAACATTCACAAGACAGCAAGAGGGGCATCTACTGGAAAAGTATCTGGTGTTTTTGAGGCCAGTAACACTATTGATTCTATGAAATTTGCATCTGTTTCGAGGTTCCATCCTCATTCTTTACCTGAATATCGCGATAGTTTAGCTAATGGAAGTCCTTACAACTATTCAAGTACCATTAACATGGCTGCCAATATTGGAAATGGATCAACGGAATCATCTGAGAGCAGGCACATTCAGGGAATAAACTCAACTGGGAACCTTGCAGAGTTTAATGCAGGAGGAAATGGAAACCGCTCCAATCATGGACTTTATCATATGTGGAATGGCTCCAACTTGCATCAACAACCTCCTTCAAATGCCATTCTTTGGCAGAAAACATCATCCTTTGTTAATGGTGCTGGTTCTCCATGTCTTCCACAGATACCCAGCTTTCCTAGAACACCTCCCCATGTGCTGAGAGCATCACATATAGACCATCAAGTGGGATCAGCACCCGTTGTTACAGCCTCACCATGGGAAAGACAACATTCTTACTTGGGAGAGTCACCGGATGGTTCTGGTTTTAGATTGGGTTCTGTGGGAAGCCCCGGCTTTCATGGTAGCTGGCAGATGCATCCTCCTGCTTCTCACAGCATATTTTCTCATGTTAGTGGGAATGGTACAGAATTGACATCAAATACTGGGCAGGGCTCTCCTAAGCAGTTATCACATGTTTTACCTGGGAGACTTCCCATGAATTTGGTTTCTAAATTTGATTCTAGCAATGAACGCCTGAGAAACCTCTATCCTCGAAGAAATGAACCAAACACTAACAGCAATGCAGATAAGAAACAATATGAACTTGACCTAGGTCGCATATTGCGTGGGGATGACAGCCGAACAACCCTCATGATAAAGAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATTGATGAACAATGTCGAGGAACATATGATTTTTTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATTATTCCATTCCACAAGGCCTTTAACGGAAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTACTCGCATATGCCCGAATTCAAGGAAAAGGTGCTCTCATTGCTCATTTTCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGCGATCCGGAGCCTTTCCCATTGGGTAACAATATTAGAGTGAGGCCTGGGAAATCTCGCGCAAATGGTAGCGAGGAGAATCGCAGCCAAGGGAATCCTTCATCTTTTGCAAGTGGTGAAGAGTCTGGGAATGGAATGGAATCATCTTCGATCTCTTCAAAAAACTCTGACTGA	2913	0.4137	MPSEIMEKRGVSASSHFLDDISYASENIGLRKPKSLHDHFLQGKSEMAASPGSILNTSSPRSTNAKSGLSISHTTLSGEITGDLHFGREAGTIEMLKDSTESLNYTKRSWSNVHRQPASSSYGLIGSKIVTNASSRESSLFSSSLSEVFSQKMRLLGNGVPSGQPITVGSLPEEEPYKSLGEIEADTIGNLLPDEDDLFSGVTNELGCSTRARMNDDFEDFDLFSSSGGMELEGDDELLISGKGTSFIYEDPDYFGASKGKLPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRASQNAMKALQNRSLRFRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLNDELKQIFGFYGEIRDIFEYPQLNHVKFIEFYDVRAAEASLRALNGICFAGKHIKLEPGHPMIATCMMQQSQKGQDDPDLGHSLSDNISLRHKAGVSSGFIASAGSLENGYNQGFHSAAQLPAFIDNSLFNMNSNIHKTARGASTGKVSGVFEASNTIDSMKFASVSRFHPHSLPEYRDSLANGSPYNYSSTINMAANIGNGSTESSESRHIQGINSTGNLAEFNAGGNGNRSNHGLYHMWNGSNLHQQPPSNAILWQKTSSFVNGAGSPCLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDGSGFRLGSVGSPGFHGSWQMHPPASHSIFSHVSGNGTELTSNTGQGSPKQLSHVLPGRLPMNLVSKFDSSNERLRNLYPRRNEPNTNSNADKKQYELDLGRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHKAFNGKKWEKFNSEKVAVLAYARIQGKGALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKSRANGSEENRSQGNPSSFASGEESGNGMESSSISSKNSD	970

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium9076g00001	970	MobiDBLite	consensus disorder prediction	905	970	-	-
	Vium9076g00001	970	CDD	RRM1_MEI2_like	269	344	IPR034453	-
	Vium9076g00001	970	SMART	rrm1_1	271	339	IPR000504	GO:0003723
	Vium9076g00001	970	SMART	rrm1_1	356	424	IPR000504	GO:0003723
	Vium9076g00001	970	SMART	rrm1_1	796	874	IPR000504	GO:0003723
	Vium9076g00001	970	FunFam	Protein MEI2-like 1	354	448	-	-
	Vium9076g00001	970	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	270	343	IPR000504	GO:0003723
	Vium9076g00001	970	Pfam	RNA recognition motif 2	794	890	IPR007201	-
	Vium9076g00001	970	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	272	335	IPR000504	GO:0003723
	Vium9076g00001	970	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	357	422	IPR000504	GO:0003723
	Vium9076g00001	970	Gene3D	-	353	449	IPR012677	-
	Vium9076g00001	970	SUPERFAMILY	RNA-binding domain, RBD	796	880	IPR035979	GO:0003676
	Vium9076g00001	970	FunFam	MEI2-like protein 5 isoform 2	259	353	-	-
	Vium9076g00001	970	CDD	RRM3_MEI2_like	797	882	IPR034454	-
	Vium9076g00001	970	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	44	965	-	-
	Vium9076g00001	970	SUPERFAMILY	RNA-binding domain, RBD	267	424	IPR035979	GO:0003676
	Vium9076g00001	970	Gene3D	-	264	352	IPR012677	-
	Vium9076g00001	970	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	355	428	IPR000504	GO:0003723
	Vium9076g00001	970	MobiDBLite	consensus disorder prediction	936	970	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium9076g00001	Vium-Chr9076	66274	74630	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium9076g00001	265	421	Eukaryotic Initiation Factors Gene Family	AT3G16380	24.719	1.57e-07	53.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium9076g00001	-		-	gmx:100797616	1689.47