Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9068g00002 ATGGGAAGCATTGATTGTATTAGGGCTGATTCTTCAATTGGGGGCAAAACCAAAGGAAGAAGAAACAACAAAGATGTTGTTCGAGGTAGTACTAAAGAAGGTTCAAGATTTTGGAAGAAATTGAGGATTTTCCTAGGTTGCATGTTTTGGAGTTCCAAAGGGGAAGCTTCTTCAAACAAAATCCATCAAATTCATGGAAGACATGTTACAAATGATGTTGATAGACAGCAACCAATTTCCCCAACATCCTCATCCAACAGAAGAATAAGTAGCCATGCAAGATTATCTGTTCCGGATCAAGAACTGTTTGAAGCTTCTTTGCTTCTTCGAAGGTTCGCTTTTCAAGATCTTATGTTGGCAACAAGAACTTTTAAGGTTGAGAATTTTCATGATGAGAAAGGGTTTGGAGTTTTGTTGAAGGGTTGGATTAATCCATATGGAAACTATGCAGCAAGGCCTGGAAAAGGGATTCCCATTGCAGTGACGGCACTCAACTTAAATCAATGTCAAGATCAAAAGGAATGGCTAGATGAAATTAGTTATCTCAGTGAACTCAATCATCTAAATCTGGTTAAAATAGTAGGTTTTTGCATTGAGGATGGCAAAAGACTACTAGTACATGAGTATATGTGTCAAGGAAGCTTAGAGAAGCATCTATTCAGCAGAACTCTTCGACTTACATGGCCTATGAGGATGAAAATTGCAATTGGTGCTGCCAATGGCCTTGCATTTTTACACGAGGAAGCTTCAAGGCCAGTAATATTTCCAGATTTTAAGACATCTAAGATCCTATTGGATATGGACTACAATGCAAAACTTTGGGACTTTGGTCTTGCTCCAGAAATTCATGCACCAACTAAAGTAGTAGCAACAAAAGGCTATGAAGCCCCTGAGTATCTCATGACAGGACGCATTACTTCTGAGAGCAATGTTTATAGCTTTGGGATTGTTCTGCTTGAAATGCTGACAGGAAGAAGAGCCTTGGATGAAACAATGCCAGCAGAGGAACAAAACCTGATAGAGTGGTTGCGACCTCATCTCAGAAACAAAGCAAACTTTCATTATTTAATGGATCCTAGACTTGAAGGGCAATACCCTACAAAGTGTGCTCATAGGACAATGAGAATAGCTACTCATTGTCTTCGCCTAGACCCTAAAGCAAGACCCCTTATGAGTGAAGTAGTTCACAAGTTGAAGTATCTGCATGATGAGATGGTTGGTGAGCTTGGTCCCAAAACCTCACATGGTGTAGGCCCTTCCAACCATGGTAGTGCTAACAAGTATGCTCTTGGAAGATGTTCATCACCTTTAAGATGTTTTCAAGGTTCACCACAGCACCAATATTACCCTCTTCCCCTACCTCCAGCTCCACCAAATCCTTCGCTTGCATCTTCGTCTAAATCCTAG 1407 0.4058 MGSIDCIRADSSIGGKTKGRRNNKDVVRGSTKEGSRFWKKLRIFLGCMFWSSKGEASSNKIHQIHGRHVTNDVDRQQPISPTSSSNRRISSHARLSVPDQELFEASLLLRRFAFQDLMLATRTFKVENFHDEKGFGVLLKGWINPYGNYAARPGKGIPIAVTALNLNQCQDQKEWLDEISYLSELNHLNLVKIVGFCIEDGKRLLVHEYMCQGSLEKHLFSRTLRLTWPMRMKIAIGAANGLAFLHEEASRPVIFPDFKTSKILLDMDYNAKLWDFGLAPEIHAPTKVVATKGYEAPEYLMTGRITSESNVYSFGIVLLEMLTGRRALDETMPAEEQNLIEWLRPHLRNKANFHYLMDPRLEGQYPTKCAHRTMRIATHCLRLDPKARPLMSEVVHKLKYLHDEMVGELGPKTSHGVGPSNHGSANKYALGRCSSPLRCFQGSPQHQYYPLPLPPAPPNPSLASSSKS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9068g00002 468 ProSiteProfiles Protein kinase domain profile. 124 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9068g00002 468 SUPERFAMILY Protein kinase-like (PK-like) 103 402 IPR011009 -
Vium9068g00002 468 PANTHER OS01G0588500 PROTEIN-RELATED 87 401 - -
Vium9068g00002 468 MobiDBLite consensus disorder prediction 67 91 - -
Vium9068g00002 468 MobiDBLite consensus disorder prediction 73 91 - -
Vium9068g00002 468 Pfam Protein tyrosine and serine/threonine kinase 135 398 IPR001245 GO:0004672|GO:0006468
Vium9068g00002 468 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 210 408 - -
Vium9068g00002 468 Gene3D Transferase(Phosphotransferase) domain 1 210 409 - -
Vium9068g00002 468 MobiDBLite consensus disorder prediction 9 29 - -
Vium9068g00002 468 Gene3D Phosphorylase Kinase; domain 1 99 209 - -
Vium9068g00002 468 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9068g00002 Vium-Chr9068 25640 49639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9068g00002 45 401 Glycoside Hydrolase AT3G07070 38.043 9.65e-82 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium9068g00002 PK_Tyr_Ser-Thr 5.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9068g00002 - - var:108344548 772.696