Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9068g00001 ATGGCCTTCCCTCCCTCTCACACCTTCATGTTCCAAACCCATGAAGATCATGACCACCACCAACTCCACCTACGCTCCACCTCTTCCTCCCTCAACGCCTTCCCCTCTTTCCCACCCCATCACTTTCAAGGGGGTGGTGCAGGTGCAGGTTTCATGATGAAGCGATCGATGTCGTTTTCAGGCATAGAGAACAAGTGCGATGAAGTGCATGGAGACGACGAGTTGTCAGATGATGGATCTCAGCTAGGAGAGAAGAAGAAGAGGCTGAGTTTGGAGCAGGTGAAGGCACTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTTGCCAAGGCTTTGGGGCTTCAACCGAGGCAAATCGCTATATGGTTCCAGAATAGGAGAGCAAGGTGGAAGACCAAGCAGCTTGAGAAAGAGTATGAAGTTCTAAAGAAGCAGTTTGAAGCTGTGAAAGCTGATAATGACTCCCTCAAGGCTCAAAATCAGAAGCTACATGCAGAGCTACAAACTCTGAAAAATAGGGACTGCTGTGAAACCGGAACAGTAATTAGCCACAAGAAAGACACTGAGGGTTCTTGGAGCAATGGAAGCAACAACAGTTCAGAAATCAACTTGGACCTCTCAAGAACACCAGTGATGAACAGTCCTGTGTCTTCTCAGAATGGAAAAAGCCTTCTACCAACTTCCCACAAGCCAACAACCATGACTCAACTCCTCCAAAGCTCATCAAGATCAGATCTCCAAGATGAAAGCTTCTGCAACATGTTCCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGACCGAGCAGCAGCACCAGTTTCATTAA 849 0.4747 MAFPPSHTFMFQTHEDHDHHQLHLRSTSSSLNAFPSFPPHHFQGGGAGAGFMMKRSMSFSGIENKCDEVHGDDELSDDGSQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKAQNQKLHAELQTLKNRDCCETGTVISHKKDTEGSWSNGSNNSSEINLDLSRTPVMNSPVSSQNGKSLLPTSHKPTTMTQLLQSSSRSDLQDESFCNMFHNIDEQQNFWPWTEQQHQFH 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9068g00001 282 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Vium9068g00001 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 274 IPR045224 GO:0003700
Vium9068g00001 282 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Vium9068g00001 282 Gene3D - 77 156 - -
Vium9068g00001 282 SMART HOX_1 83 144 IPR001356 GO:0003677
Vium9068g00001 282 SUPERFAMILY Homeodomain-like 76 142 IPR009057 -
Vium9068g00001 282 PRINTS Lambda-repressor HTH signature 111 120 IPR000047 GO:0003677
Vium9068g00001 282 PRINTS Lambda-repressor HTH signature 120 136 IPR000047 GO:0003677
Vium9068g00001 282 Coils Coil 132 180 - -
Vium9068g00001 282 FunFam Homeobox-leucine zipper protein ATHB-13 77 144 - -
Vium9068g00001 282 Pfam Homeobox associated leucine zipper 140 180 IPR003106 GO:0006355|GO:0043565
Vium9068g00001 282 Pfam Homeodomain 85 138 IPR001356 GO:0003677
Vium9068g00001 282 CDD homeodomain 85 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9068g00001 Vium-Chr9068 583 3594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9068g00001 1 276 Homeobox Transcription Factor Family AT3G01220 50.859 2.55e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium9068g00001 Homeodomain 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9068g00001 K09338 - gmx:100790803 479.944