Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9062g00009 ATGTGGTATTTGGACAACGGTTGTTTGAGGCACATGATCGGAGAGGCTAAACAATTCAACAACTTATCTTCCAAAACCAATGGACATGTCACATATGAGGACAATAACAAGGATAAAATCATTGGTGTTGGTAAAATACAAATTCCTTCCTCCTATAATATTGAAAATGTTTTACTTGTTGAGGGTCGTAAGCGTACTTTGAGGTTCATTTTCATGATGGCTCCCTTCCACATGCTGGAAGAAGTACCAACACCAAACCTGCAACACCTTTTCTCCTATTACATTGACCCAACTGGTGGTTCTCTTTACCCTTCAGATATTGACACTTCTCTCTATGATCCTTCCATTTCCCTTGCTCATTCTATCATCTTTCCAACTTCTCAACAAGATACTCTACTCCCATCTCCCAAACGCCAAAAGTGCTGCTGTGAGAGCGAAGTGCAAAAACTTACTACACAAACTGCCCTGCCATCCAGTTACACAGATGAATTTCTTGTGCCTTATGATAATTTCTACTCTTCACACATTGAGGAACTGCCACAACAAATATCAGTTGGGTTTGCACAATTTCATAGTACCTGTGAGGATCTTAAGTGTGTGAAAAAAGAAACGGAGAAAACAATATCTCCCCAAAGCTTAGCAGCACGAGAGAGGAGAAGAAGGATCAGTGAGAAGACGCAGCAACTAGGAAAATTGGTTCCTGGTGGACCAAAGATGAACACGGCTGAAATGCTTCATGCAGCTGCAAAGTATGTTAAGTACCTTCAAGCCCAAGTTAACTTGCTTGAACTCACAAAATCACTGGTAACTGTTCATTTCTTTTCATATTCTTTATGA 837 0.4026 MWYLDNGCLRHMIGEAKQFNNLSSKTNGHVTYEDNNKDKIIGVGKIQIPSSYNIENVLLVEGRKRTLRFIFMMAPFHMLEEVPTPNLQHLFSYYIDPTGGSLYPSDIDTSLYDPSISLAHSIIFPTSQQDTLLPSPKRQKCCCESEVQKLTTQTALPSSYTDEFLVPYDNFYSSHIEELPQQISVGFAQFHSTCEDLKCVKKETEKTISPQSLAARERRRRISEKTQQLGKLVPGGPKMNTAEMLHAAAKYVKYLQAQVNLLELTKSLVTVHFFSYSL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9062g00009 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 255 IPR011598 GO:0046983
Vium9062g00009 278 Pfam Helix-loop-helix DNA-binding domain 216 256 IPR011598 GO:0046983
Vium9062g00009 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 267 IPR036638 GO:0046983
Vium9062g00009 278 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 198 265 IPR045843 GO:0003700|GO:0006355
Vium9062g00009 278 SMART finulus 212 261 IPR011598 GO:0046983
Vium9062g00009 278 Gene3D - 205 271 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9062g00009 Vium-Chr9062 67107 69145 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9062g00009 205 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 63.492 1.14e-16 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium9062g00009 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9062g00009 - - vum:124847969 565.074