Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9057g00001 ATGGCCGGGTTCTTCTCTCTAGGTGGAACTAGAAGGGGAGGTCCACAAAACAAGGAAGAGGGAGAGGTGGAAAAAGGAGATAACAATATCCACAACAACAACGGGAATAACCTATTGTTGTTCAGGAACGAGGAGATCTACAACAAGGGGTTCGAGATATGGCCAGAGTCGTATCAGCCCCAAGCTGCACCCCAAAACTTGAGCAACTACTTTGCGTTTGGAGTGGGTCCTAGTCGCAGGAACTGCTCGAGCGTGAACGAGGAGGAGGTTTCGCTCTGTGTGTCTGATGAGTCAACGAGATTTGGATTAACTGTCATGAGGTCCGGAGGTGCAGGAAGCAGCGGCATGAACTGTCAGGACTGTGGTAACCAAGCCAAGAAAGATTGTACACATCTCAGATGCAGGACCTGCTGTAAGACCCGAGGGTTTCAGTGCCAAACCCACGTTAAGAGCACTTGGGTTCCAGCAGCCAAACGCCGCGAACGACAACAACAACTCGCTTCCTTGCAGAGCCCACAACAATTTCGCCCAGAGAATATTCCCAAACGATATCATAGAGACACTCAGCTCGTCTCCGCTCCTCAACCCATCGCAGGGTTAGAGCTGGGGCATTTCCCACCTGAAGTGAGCACTTCGGCGGTGTTTCGGTGTGTGAGAGTCAGCGCAGTGGACGCTTCAGATGAACAGTGCGCGTACCAAACCTCTGTCAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCTGAAAGTTCTTACACCGGTGCAGTTACTGAGGGTTCCTCCGGTGGTGAACCCCGACATCTTGGTTTAATAACCGCCGCAGCCACAGCCACAGCCACAACAGTCGGTGGAAACAACCCATTTGAGCCTTCACTTTACCCCGCTTCGCTGAATGCTTTCATGTCTGGTACACAATTCTTCCATCCCCCAAGGTCCTAA 951 0.5152 MAGFFSLGGTRRGGPQNKEEGEVEKGDNNIHNNNGNNLLLFRNEEIYNKGFEIWPESYQPQAAPQNLSNYFAFGVGPSRRNCSSVNEEEVSLCVSDESTRFGLTVMRSGGAGSSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERQQQLASLQSPQQFRPENIPKRYHRDTQLVSAPQPIAGLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPESSYTGAVTEGSSGGEPRHLGLITAAATATATTVGGNNPFEPSLYPASLNAFMSGTQFFHPPRS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9057g00001 316 NCBIfam putative zinc finger domain, LRP1 type 117 159 IPR006510 -
Vium9057g00001 316 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 288 IPR007818 GO:0003700|GO:0006355
Vium9057g00001 316 NCBIfam LRP1 C-terminal domain 204 252 IPR006511 -
Vium9057g00001 316 MobiDBLite consensus disorder prediction 1 35 - -
Vium9057g00001 316 Pfam Domain of unknown function (DUF702) 115 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9057g00001 Vium-Chr9057 12014 15046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9057g00001 1 316 C2H2 Transcription Factor Family AT1G75520 45.405 1.05e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vium9057g00001 DUF702 1.9e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9057g00001 - - gmx:100818588 448.743