Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9056g00006 ATGCCCCCACCTCCTTCTCTCATTCCCTTCACAAAACTCAACTCTCTATTTCCCCCCACACGCACACCTCTTTCTCTCTCTCTCTCTCTCACGCACAACACAGCAAACTCCAACTCCATTATTATTACTGCAGTTATTGTTAGAATCATTAGCGACACAATGCACTCCTCCGCCGAGGACGACTCCGACAACCCTGCCACCACCGCGGGCGCGGAGTGGACGTTCTCCGCCAGGAACCACGCACCGTCGTCGGACCCCTGCTGGGAAGCCATAGAGCGCGGCGGCGGGACCCTGGGATTGGGTGACCTCCGGTTTGTGCAGCGAGTGGGGAGCGGCGATATCGGAAGCGTGTACTTGGTGGAGCTGAAGGGCTCGAACGGGTGCCTGTTCGCGGCAAAGGTGATGGACAAGAAGGAACTCGTGGCCAGGAACAAAGACACGAGGGCAAAGGTTGAGAGAGAGATTCTGCAAGCGGTGGATCACCCTTTTTTGCCAACTCTTTACGCGTCGCTCGATTCCCCGCGCTGGTCTTGCCTCCTGACTGAGTTCTGCCCCGGCGGCGACCTCCACGTCCTCCGCCAGCGGCAGCCCGATAAACGCTTCCACCACGCCGCCGTCAGGTTCTACGCATCTGAGGTTGTGGTTGCCTTGGAGTACCTACACATGATGGGGATAATATACCGTGATTTGAAGCCTGAAAATGTGCTCATAAGATCGGACGGTCACGTAATGCTCACTGACTTTGACCTCTCACTGAAAGGCGACGACACAACATCAACGGCTCAGATCGTGTTCGATCAAGATCCACCCTGCAACACCTGTTCCAACGACCATTCCAAGAACCAATGCGCCCCCGCCATGTCATCCTGCATGCTGCCAAATTGCATTGTGCCATCTGTCCCATGCTTCCACCCGAAACGCGGTCGTAGCAAGAGGTCATCGCGGTGTGGGTCGGTGGAGATCGTGGCGGAGCCAATAGAAATTCGGTCGACGTCGTTCGTTGGGACCCATGAGTACTTGGCGCCGGAAGTGATTTCCGGGGAGGGTCACGGTAACGCCGTTGATTGGTGGACACTGGGAGTATTCATTTTTGAACTGTTCTACGGGATGACACCCTTCAAAGGGGTTGAGCATGAGCTAACCCTAGCGAACATAGTGGCACGTGCCCTTGAGTTCCCTAAGGAGCCAATGATCCCAGGAGCAGCTAGGGATTTGATATCACAACTGTTGGTGAAGGACTCAACAATGAGACTGGGTTCAACAATGGGTGCCCTAGCAATCAAGCACCACCCCTTCTTCAATGGAGTTAATTGGGCATTGTTAAGGTGTGCTACCCCTCCATACATCCCTGCATCAGACAAGTGCAAGGAATTGGTTCGACTCTATAATTGCACAACCAATACCGTAGACTTCTATTAG 1419 0.5426 MPPPPSLIPFTKLNSLFPPTRTPLSLSLSLTHNTANSNSIIITAVIVRIISDTMHSSAEDDSDNPATTAGAEWTFSARNHAPSSDPCWEAIERGGGTLGLGDLRFVQRVGSGDIGSVYLVELKGSNGCLFAAKVMDKKELVARNKDTRAKVEREILQAVDHPFLPTLYASLDSPRWSCLLTEFCPGGDLHVLRQRQPDKRFHHAAVRFYASEVVVALEYLHMMGIIYRDLKPENVLIRSDGHVMLTDFDLSLKGDDTTSTAQIVFDQDPPCNTCSNDHSKNQCAPAMSSCMLPNCIVPSVPCFHPKRGRSKRSSRCGSVEIVAEPIEIRSTSFVGTHEYLAPEVISGEGHGNAVDWWTLGVFIFELFYGMTPFKGVEHELTLANIVARALEFPKEPMIPGAARDLISQLLVKDSTMRLGSTMGALAIKHHPFFNGVNWALLRCATPPYIPASDKCKELVRLYNCTTNTVDFY 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9056g00006 472 FunFam serine/threonine-protein kinase D6PKL2 102 187 - -
Vium9056g00006 472 FunFam Serine/threonine-protein kinase OXI1 188 256 - -
Vium9056g00006 472 CDD STKc_phototropin_like 106 453 - -
Vium9056g00006 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Vium9056g00006 472 Gene3D Transferase(Phosphotransferase) domain 1 188 264 - -
Vium9056g00006 472 PANTHER FLIPPASE KINASE 1-RELATED 57 452 - -
Vium9056g00006 472 Pfam Protein kinase domain 330 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9056g00006 472 Pfam Protein kinase domain 105 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9056g00006 472 Gene3D Phosphorylase Kinase; domain 1 102 187 - -
Vium9056g00006 472 ProSiteProfiles Protein kinase domain profile. 103 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9056g00006 472 FunFam serine/threonine-protein kinase D6PK-like 328 451 - -
Vium9056g00006 472 Gene3D Transferase(Phosphotransferase) domain 1 329 451 - -
Vium9056g00006 472 SMART serkin_6 103 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9056g00006 472 SUPERFAMILY Protein kinase-like (PK-like) 91 451 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9056g00006 Vium-Chr9056 28135 31080 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9056g00006 105 472 AGC Kinase Gene Family AT3G44610 64.752 1.93e-178 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium9056g00006 Pkinase 4.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9056g00006 K08286 - gmx:100786154 765.377