Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9056g00003 ATGGGACGAGCTCACGGGAAAGCGACCTCTGTTGGCCTGACAAAGACCCGCCGAGGCAGCAGGTTGAAGGACAGGAGACGGTTCTGCAAAGCGGGTGGCATCACCCTTTTTGCCAGTCGTTTACGCGTCGCCTCGTTCCCCGCGCTGGTCTTGCCTCCTGACCGATTTCTGCCCCGCGGCGACCTCCACGTCCCTCCGCCCGGGCAGCCCGATAAACGCTTCCACCACCCGCCGTCCAGGCCGTCTGTCTCTCCTTTCTCTGCTTCACTCTCCCTATTTAATCTGCATCTTGATCCTGGTTGTGGTTACAGGTTCTACGCATCTGAGGTTGTGGTTGCCTTGGAGTACCTACACATGATGGGGATAATATACCGTGATTTGAAGCCTGAAAATGTGCTCATAAGATCGGACGGTCACGTAATGCTCACTGACTTTGACCTCTCACTGAAAGGCGACGACACAACATCAACGGCTCAGATCGTGTTCGATCAAGATCCACCCTGCAACACCTGTTCCAACGACCATTCCAAGAACCAATGCGCCCCCGCCATGTCATCCTGCATGCTGCCAAATTGCATTGTGCCATCTGTCCCATGCTTCCACCCGAAACGCGGTCGTAGCAAGAGGTCATCGCGGTGTGGGTCGGTGGAGATCGTGGCGGAGCCAATAGAAATTCGGTCGACGTCGTTCGTTGGGACCCATGAGTACTTGGCGCCGGAAGTGATTTCCGGGGAGGGTCACGGTAACGCCGTTGATTGGTGGACACTGGGAGTATTCATTTTTGAACTGTTCTACGGGATGACACCCTTCAAAGGGGTTGAGCATGAGCTAACCCTAGCGAACATAGTGGCACGTGCCCTTGAGTTCCCTAAGGAGCCAATGATCCCAGGAGCAGCTAGGGATTTGATATCACAACTGTTGGTGAAGGACTCAACAATGAGACTGGGTTCAACAATGGGTGCCCTAGCAATCAAGCACCACCCCTTCTTCAATGGAGTTAATTGGGCATTGTTAAGGTGTGCTACCCCTCCATACATCCCTGCATCAGACAAGTGCAAGGAATTGGTTCGACTCTATAATTGCACAACCAATACCGTAGACTTCTATTAG 1110 0.5333 MGRAHGKATSVGLTKTRRGSRLKDRRRFCKAGGITLFASRLRVASFPALVLPPDRFLPRGDLHVPPPGQPDKRFHHPPSRPSVSPFSASLSLFNLHLDPGCGYRFYASEVVVALEYLHMMGIIYRDLKPENVLIRSDGHVMLTDFDLSLKGDDTTSTAQIVFDQDPPCNTCSNDHSKNQCAPAMSSCMLPNCIVPSVPCFHPKRGRSKRSSRCGSVEIVAEPIEIRSTSFVGTHEYLAPEVISGEGHGNAVDWWTLGVFIFELFYGMTPFKGVEHELTLANIVARALEFPKEPMIPGAARDLISQLLVKDSTMRLGSTMGALAIKHHPFFNGVNWALLRCATPPYIPASDKCKELVRLYNCTTNTVDFY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9056g00003 369 MobiDBLite consensus disorder prediction 1 24 - -
Vium9056g00003 369 SMART serkin_6 71 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9056g00003 369 SUPERFAMILY Protein kinase-like (PK-like) 103 348 IPR011009 -
Vium9056g00003 369 Pfam Protein kinase domain 227 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9056g00003 369 Pfam Protein kinase domain 103 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9056g00003 369 FunFam serine/threonine-protein kinase D6PK-like 225 348 - -
Vium9056g00003 369 MobiDBLite consensus disorder prediction 60 81 - -
Vium9056g00003 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Vium9056g00003 369 ProSiteProfiles Protein kinase domain profile. 1 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9056g00003 369 PANTHER FLIPPASE KINASE 1-RELATED 56 349 - -
Vium9056g00003 369 Gene3D Transferase(Phosphotransferase) domain 1 104 158 - -
Vium9056g00003 369 Gene3D Transferase(Phosphotransferase) domain 1 226 348 - -
Vium9056g00003 369 FunFam Serine/threonine-protein kinase OXI1 101 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9056g00003 Vium-Chr9056 12926 15415 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9056g00003 55 369 AGC Kinase Gene Family AT3G44610 58.567 3.60e-125 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium9056g00003 Pkinase 1.1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9056g00003 K08286 - vum:124847942 752.666