Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9047g00001 ATGGCTATTGCAGCTCCAGGGCAATTGAACGTTAATGAATCGCCCACTTGTGGATCCAGAAGTGTCGATTGCTTCGAGAAACTGGAGCAAATTGGCGAAGGCACATATGGTCAGGTTTACATGGCTAAAGAGATCAAAACTGGTGAAATTGTTGCTCTGAAGAAAATACGTATGGACAATGAGAGAGAGGGGTTTCCTATAACTGCTATACGAGAAATCAAAATTCTTAAGAAACTACATCATGAAAATGTGATCAAGCTGAAAGAAATTGTGACTTCTCCAGGTCCTGAGAAAGATGAACAGGGGAGGCCAGATGGTAACAAATATAGAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTAACAGGCCTTGCTGACCGACCTGGGATGAGATTTACAGTTCCCCAAATTAAGTGTTACATGAGACAACTGTTGACGGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATCGTGATATCAAAGGCTCAAATCTTCTTATAGACAACGAGGGAAACCTTAAGCTTGCAGATTTTGGACTAGCACGATCGTTTTCTAATGACCAAAATGCTAATCTTACAAATCGTGTCATTACATTATGGTACAGACCTCCTGAGTTGCTGCTTGGGACAACAAAGTATGGGCCTGCTGTAGATATGTGGTCAGTTGGGTGCATTTTTGCTGAGCTTCTTCAAGGGAAGCCTATCTTTCCTGGAAAAGATGAGCCAGAACAATTAAATAAAATATATGAGCTGTGTGGAGCACCAACTGAAATCAACTGGCCTGGGGTTTCTAAGATACCTTATTATAATAAATTTATGCCAACAAGGCCAATGAAAAGACGTTTGAGGGAAGTTTTCCGGCATTTTGATCATCATGCTCTGGAGTTGTTGGAGAAGATGTTGACACTTGATCCAGCACAGAGAATTACTGCGAAAGATGCACTTGATGCTGAGTATTTCTGGACAGATCCATTACCATGTGACCCCAAGAGTTTGCCCAAGTACGAGTCATCGCATGAGTTTCAGACAAAGAAAAAGCGCCAACAGCAACGGCAAAATGAAGAAATGGCTAAGCGTCAGAAAATGCAGCACCCACAGCAGCACAGTCGTCTTCCCCCCATTCAGCAGCCCGGACAACATGGTCAAATGCGGTCAGGACCAAACCAACAGATTCATGGCTCTCAACCCCCAGTTGCTGCAGGACCCACTCATCATTATGGGAAACCTAGAGGTCCATCTGGTGGACCAGGAAGATATCCTCCCAATGGGAACCAAGGCGGAGGATACAATCACCCAAATCGAGGAGGTCAAGGTGGTGGTTATGGCACTGGACCTTATCCTCCTCAAGGGCGGGGGGCACCTTATGGGTCCAATAACATGCCTGGTGGCGGTCCTCGCGGTGGCGGTGGTGGTGGCAGTGGGTATGGAGTTGGAGCTCCAAATTATCCCCAACAAGGTGGTCCATATGGGGGTTCAGCAGCTGGTCGTGGCTCGAACATGATGGGTGGAAACCGCAATCAACAACAGTATGGTTGGCAGCAGTAA 1557 0.4573 MAIAAPGQLNVNESPTCGSRSVDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPDGNKYRGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDQNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLQGKPIFPGKDEPEQLNKIYELCGAPTEINWPGVSKIPYYNKFMPTRPMKRRLREVFRHFDHHALELLEKMLTLDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEEMAKRQKMQHPQQHSRLPPIQQPGQHGQMRSGPNQQIHGSQPPVAAGPTHHYGKPRGPSGGPGRYPPNGNQGGGYNHPNRGGQGGGYGTGPYPPQGRGAPYGSNNMPGGGPRGGGGGGSGYGVGAPNYPQQGGPYGGSAAGRGSNMMGGNRNQQQYGWQQ 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9047g00001 518 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Vium9047g00001 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Vium9047g00001 518 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Vium9047g00001 518 PANTHER CELL DIVISION PROTEIN KINASE 23 330 - -
Vium9047g00001 518 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9047g00001 518 CDD STKc_CDK9_like 25 324 - -
Vium9047g00001 518 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Vium9047g00001 518 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9047g00001 518 FunFam Cyclin-dependent kinase C-2 12 121 - -
Vium9047g00001 518 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9047g00001 518 MobiDBLite consensus disorder prediction 503 518 - -
Vium9047g00001 518 MobiDBLite consensus disorder prediction 370 400 - -
Vium9047g00001 518 MobiDBLite consensus disorder prediction 335 518 - -
Vium9047g00001 518 SUPERFAMILY Protein kinase-like (PK-like) 20 332 IPR011009 -
Vium9047g00001 518 MobiDBLite consensus disorder prediction 337 366 - -
Vium9047g00001 518 FunFam Cyclin-dependent kinase C-2 122 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9047g00001 Vium-Chr9047 539 6095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9047g00001 1 518 Core Cell Cycle Gene Families AT5G10270 76.145 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium9047g00001 Pkinase 1.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9047g00001 K08819 - gmx:100795971 895.96