Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9043g00017 ATGAGAAAACGTAGCAATATGGAAAACGGTGCTGACTTCTTCAATTCCTTTGCCTCAACTTCCACTTCTACCACTTCTACCACCACCACCACCGCCACCACAACCCCTTCAATCTTCATTGACACAACAAACACTTCTATATCTAGCACATCATCGTCATCATCGTCATCGTCATCTTCAACCTCAAACTCCTCAAACTCAGATTCCACTTCTCAAACCTTGTTGGAAAATGAAAAGGAATCAAAAGGGTGCTGCAAGAAGAGGAAGTTGGAGAATCCTTCCTATAGGGGTGTGAGGATGAGGAACTGGGGCAAATGGGTGTCTGAAATCCGTGAGCCAAGGAAAAAATCAAGAATTTGGCTCGGAACATACCCTACTGCAGAAATGGCTGCTAGAGCACATGATGTAGCTGCTTTAGCCATCAAGGGTCATTCTGCATACCTCAATTTCCCCGAATTGGCTCAAGAAATTCCGACACCAGCTTCTACTTCACCTAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAAACACACCCTTTGATGTTAATCATTGCCAAAGTACTATTGAAGATGAAGAAGGACAAGAAGAAGAGCCACGCCAAGCACAAAATGTCTCATCTTCAAGCTCAAACTCAAACTCCACCAATGATGATGACACTTTGTTTGATCTACCAGATCTTTTCCCTGATGAACTTTGCTCCTATTCTTCTTCTTGGCATTTGTGTGCAGTTGGTAGTGGATTTAGGCTTGAAGAGTCACTTTTTTGGGAGAATTATTAG 780 0.4321 MRKRSNMENGADFFNSFASTSTSTTSTTTTTATTTPSIFIDTTNTSISSTSSSSSSSSSSTSNSSNSDSTSQTLLENEKESKGCCKKRKLENPSYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQEIPTPASTSPKDIQAAAAKAANTPFDVNHCQSTIEDEEGQEEEPRQAQNVSSSSSNSNSTNDDDTLFDLPDLFPDELCSYSSSWHLCAVGSGFRLEESLFWENY 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9043g00017 259 ProSiteProfiles AP2/ERF domain profile. 94 151 IPR001471 GO:0003700|GO:0006355
Vium9043g00017 259 MobiDBLite consensus disorder prediction 200 220 - -
Vium9043g00017 259 Gene3D AP2/ERF domain 94 152 IPR036955 GO:0003700|GO:0006355
Vium9043g00017 259 MobiDBLite consensus disorder prediction 1 84 - -
Vium9043g00017 259 CDD AP2 93 153 IPR001471 GO:0003700|GO:0006355
Vium9043g00017 259 SMART rav1_2 94 157 IPR001471 GO:0003700|GO:0006355
Vium9043g00017 259 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Vium9043g00017 259 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Vium9043g00017 259 Pfam AP2 domain 93 144 IPR001471 GO:0003700|GO:0006355
Vium9043g00017 259 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 57 231 - -
Vium9043g00017 259 FunFam Ethylene-responsive transcription factor 2 93 152 - -
Vium9043g00017 259 MobiDBLite consensus disorder prediction 9 78 - -
Vium9043g00017 259 MobiDBLite consensus disorder prediction 189 221 - -
Vium9043g00017 259 SUPERFAMILY DNA-binding domain 94 152 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9043g00017 Vium-Chr9043 124495 125552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9043g00017 86 255 AP2-EREBP Transcription Factor Family AT2G44940 52.427 6.53e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium9043g00017 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9043g00017 - - var:108346814 365.155