Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9043g00016 ATGTTTGGACGAGGTGGACCTAGGAGGAGTGATAACTCTAAATATTATGATATTCTTGGAGTTTCAAAGAATGCCACTGAAGATGAAATCAAGAAAGCATACAGAAAGGCAGCTATGAAGAATCATCCGGATAAAGGTGGAGATCCTGAAAAGTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATTCTGAGAAGAAAGAATTGTATGATCAGTATGGTGAAGATGCCCTTAAAGAAGGGATGGGAGGAGGAGGAGGAGGCTCGTTTCATAATCCATTTGATATATTTGAGTCATTTTTTGGAGGATCAAGCTTTGGTGGTGGTGGTAGTTCACGAGGCAGAAGAAAAAAACATGGTGAAGATGTGGTGCACTCTTTAAAGGTGTCCTTGGAGGATGTCTATAATGGTGCAACTAAGAAACTATCTCTTTCTAGAAATGTATTATGCCCAAAGTGTAAAGGGAATGGGTCAAAAAGTGGTGCAACTAGTAGGTGTTTTGGTTGCCAAGGCACTGGTATGAAGGTCACAAGAAGGCAGATAGGACTAGGCATGATTCAACAAATGCAACATGTCTGCCCGGACTGCAGAGGATCTGGTGAGGTTATTAGCGAAAGAGATAAATGTCCTCAATGCAAAGGAAACAAGGTTACTCATGAAAAGAAGGTACTGGAGGTGCATGTTGAAGAGGGAATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTCCTGACGCATTGACAGGAGACATTGTTTTAGTATTGGCAGTGAAAGAGCACCCAAAGTTCAGAAGGGAGCGAGATGATCTCTTCATTGATCACACTCTCAGCTTAAGTGAGGCACTCTGTGGCTTCCAGTTTACTATCACACATCTTGATGGCAGGCAATTACTGATCAAATCAAACCCTGGGGAAGTCATTAAGCCAGGTCAATCTAAAGCAATAAATGATGAGGGAATGCCACTACACAAGAAGACATTCATGAGGGGTCGGCTTTACATCCAGTTCAATGTTGAATTCCCAGACTCAGGGTTTATTTCCCCTGATCAATGCCTGTTATTGGAAAAGGTATTACCTCAGAAGGGCAGCAAGCGCATTTCAGATGCAGAGCTTGATGACTGTGAAGAGACCACTTTGCATGATGTCAATTTCAAGGAGGAGATGAAACGAAAACATCAACACCATTACCGTGAGGCATACGATGAAGACGAAGATGAAGGTCCTTCTGGTCACAGGGTGCAATGTGCTCAACAGTAG 1272 0.4261 MFGRGGPRRSDNSKYYDILGVSKNATEDEIKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDSEKKELYDQYGEDALKEGMGGGGGGSFHNPFDIFESFFGGSSFGGGGSSRGRRKKHGEDVVHSLKVSLEDVYNGATKKLSLSRNVLCPKCKGNGSKSGATSRCFGCQGTGMKVTRRQIGLGMIQQMQHVCPDCRGSGEVISERDKCPQCKGNKVTHEKKVLEVHVEEGMQQGQKIVFEGQADEAPDALTGDIVLVLAVKEHPKFRRERDDLFIDHTLSLSEALCGFQFTITHLDGRQLLIKSNPGEVIKPGQSKAINDEGMPLHKKTFMRGRLYIQFNVEFPDSGFISPDQCLLLEKVLPQKGSKRISDAELDDCEETTLHDVNFKEEMKRKHQHHYREAYDEDEDEGPSGHRVQCAQQ 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9043g00016 423 Gene3D DnaJ domain 11 112 IPR036869 -
Vium9043g00016 423 SMART dnaj_3 13 67 IPR001623 -
Vium9043g00016 423 ProSiteProfiles Zinc finger CR-type profile. 138 222 IPR001305 GO:0031072|GO:0051082
Vium9043g00016 423 MobiDBLite consensus disorder prediction 390 423 - -
Vium9043g00016 423 Pfam DnaJ domain 14 72 IPR001623 -
Vium9043g00016 423 FunFam dnaJ protein homolog 11 112 - -
Vium9043g00016 423 PRINTS DnaJ domain signature 67 86 IPR001623 -
Vium9043g00016 423 PRINTS DnaJ domain signature 16 34 IPR001623 -
Vium9043g00016 423 PRINTS DnaJ domain signature 47 67 IPR001623 -
Vium9043g00016 423 FunFam DnaJ subfamily A member 2 265 347 - -
Vium9043g00016 423 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Vium9043g00016 423 ProSiteProfiles dnaJ domain profile. 14 75 IPR001623 -
Vium9043g00016 423 SUPERFAMILY Chaperone J-domain 10 110 IPR036869 -
Vium9043g00016 423 Gene3D - 113 265 - -
Vium9043g00016 423 SUPERFAMILY HSP40/DnaJ peptide-binding domain 268 347 IPR008971 GO:0006457|GO:0051082
Vium9043g00016 423 Pfam DnaJ central domain 151 217 IPR001305 GO:0031072|GO:0051082
Vium9043g00016 423 FunFam DnaJ subfamily A member 2 151 217 - -
Vium9043g00016 423 Gene3D - 151 217 - -
Vium9043g00016 423 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 148 219 IPR036410 -
Vium9043g00016 423 Hamap Chaperone protein DnaJ [dnaJ]. 11 396 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vium9043g00016 423 MobiDBLite consensus disorder prediction 390 415 - -
Vium9043g00016 423 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 13 403 IPR044713 GO:0006457|GO:0030544
Vium9043g00016 423 CDD DnaJ_zf 151 217 IPR001305 GO:0031072|GO:0051082
Vium9043g00016 423 Pfam DnaJ C terminal domain 125 346 IPR002939 -
Vium9043g00016 423 CDD DnaJ_C 122 348 - -
Vium9043g00016 423 CDD DnaJ 15 64 IPR001623 -
Vium9043g00016 423 SUPERFAMILY HSP40/DnaJ peptide-binding domain 122 266 IPR008971 GO:0006457|GO:0051082
Vium9043g00016 423 Gene3D - 266 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9043g00016 Vium-Chr9043 87720 92007 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9043g00016 9 74 C2H2 Transcription Factor Family AT1G74250 41.333 1.72e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9043g00016 K09503 - gmx:100800590 736.102