Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9043g00011 ATGCATGCGAGAAAAATGCACGGGAAAAAGGAGCAAGAAGAGTATATAAGGAAAGGGCCATGGAAAGCAGAAGAAGATGAGGTGCTACTGAACCATGTGAAGAAGTATGGTCCCAGAGATTGGAGCTCCATTCGATCCAAGGGTCTTCTTCAAAGAACTGGCAAGTCTTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTCAAGAATGGTTGCAAGTTTTCACTCGAGGAAGAGAGGATTGTGATAGAGTTGCAGGAACAATTTGGGAACAGGTGGGCTAAGATTGCATCCTTTTTGTCAGGGAGAACAGACAATGATGTGAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCCAGGATTCTACAGACATCGGGAACAACTTCCAAATCACAGAAAAATAAAACAAAAGTTCCTACCCTTCTTGATGTTCCAACTTTGGAGGCTCCAAAATTCAGTTCTTCATCAGAGGGAGAATCATCATCAAAGCCTCAGTCATACTCACTACCTTTGATTGAGAATTCTGAGGTTATCAAAATGGTATCTTTACCAGATCTCATAAAGTCTGAGTTACCTAGTTCTGACCCAATCCATGTTGAACAAGGTTTTACCCCTTTTGAGAGCTATAACAGTAGTGAGCAGATTCAACAGATTTCCTTTCCTCAGATTCCAGAACTCCAACATGATCTCACATTCCCAATGGGAAGCCAAGATGTCTTAGCCAGAATCGATGAGCCATATTTCGTTGAAGACTATTGTGCTCTTGATGATGCATCTGAGTTTGGAATAGGTCTGCAGCACCCCATTGGATTCCCTTTCTTCGAGCCACCAGGAAGTTGCAGAATTGAGACAAGGGATACCATTGATAAGTTCAAAAGCAGTGACAGCTTCTTCGATGACTTCCCTATGGACATGTTTGATCACATGGACCCACCTGCAAGCCCTTCTTTCTTATGA 963 0.4289 MHARKMHGKKEQEEYIRKGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQEQFGNRWAKIASFLSGRTDNDVKNFWSSRQKRLARILQTSGTTSKSQKNKTKVPTLLDVPTLEAPKFSSSSEGESSSKPQSYSLPLIENSEVIKMVSLPDLIKSELPSSDPIHVEQGFTPFESYNSSEQIQQISFPQIPELQHDLTFPMGSQDVLARIDEPYFVEDYCALDDASEFGIGLQHPIGFPFFEPPGSCRIETRDTIDKFKSSDSFFDDFPMDMFDHMDPPASPSFL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9043g00011 320 Pfam Myb-like DNA-binding domain 74 113 IPR001005 -
Vium9043g00011 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 121 IPR017930 -
Vium9043g00011 320 FunFam MYB transcription factor 18 70 - -
Vium9043g00011 320 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
Vium9043g00011 320 Pfam Myb-like DNA-binding domain 21 71 - -
Vium9043g00011 320 CDD SANT 74 113 IPR001005 -
Vium9043g00011 320 CDD SANT 20 65 IPR001005 -
Vium9043g00011 320 FunFam Transcription factor GAMYB 73 142 - -
Vium9043g00011 320 ProSiteProfiles Myb-like domain profile. 74 117 IPR001005 -
Vium9043g00011 320 Gene3D - 73 142 - -
Vium9043g00011 320 SMART sant 17 67 IPR001005 -
Vium9043g00011 320 SMART sant 71 119 IPR001005 -
Vium9043g00011 320 PANTHER TRANSCRIPTION FACTOR DUO1 8 318 - -
Vium9043g00011 320 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Vium9043g00011 320 Gene3D - 18 70 - -
Vium9043g00011 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 69 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9043g00011 Vium-Chr9043 40745 43149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9043g00011 4 317 MYB Transcription Factor Family AT3G60460 48.024 1.74e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium9043g00011 Myb_DNA-bind_6 5.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9043g00011 K09422 - gmx:100805384 494.582