Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9032g00001 ATGAAGAGGTCTCCATCATCTTCTTGTTCATCATCTTCTGAAACTCCCATTGCTGAGCAAGGAAAAAGAAGACCTAATTATCCAAGGAGGAACAACTTGAAGTCACAGAAATGCAAGCAGAATCAAACCACTTGCAGAAGAAGTTCTGTCTATAGAGGAGTTACAAGACATAGGTGGACAGGTAGGTTTGAAGCTCACCTATGGGATAAGACCTCTTGGAACAACATTCAAAGCAAGAAGGGTAAACAAGTTTATTTGGGAGCATACGATACTGAAGAAGCTGCAGCCCGTACCTATGATCTTGCAGCCCTGAAGTACTGGGGAAAAGATGCAGTTTTGAATTTTCCGATAGGAAATTACACAAAGGATCTTGAGGAAATTGACAAAGTTTCAAAAGAAGAATATTTAGCTTCTTTGCGGCGCCAAAGCAGTGGTTTTTCTAGAGGCATATCTAAGTATCGTGGGGTTGCTAGGCATCATCATAATGGGCGTTGGGAAGCGCGCATAGGAAGAGTGTGTGGAAACAAGTACCTTTACTTGGGAACATATAAAACTCAAGAGGAGGCAGCTGTGGCATATGACTTAGCAGCAATAGAGTACAGAGGACTGAATGCAGTGACCAATTTTGACATAAGCAACTACATTGACAAAAGGAAAAAGGACCAAACTCAAGAAACAGTAGCACAAAGAGAAACAGTTCCCAACTCCTCAGACTCAGAAGAAGCAGAAGTAGAACAACAACAGAACACAACTACGCCAACCCCTTCTGAGAATCTGCACATGGCAGCAGTGCAGCACAACCAAGTTCCACACACACCCCTTAAGGAAGAGTCATCATCACTGGTCACTATTATGGATCATGTGCTTGAACAGGATCTGCCATGGAGCTTCATGTACACTGGGGTGTCTGAGTTTCAAGATCAAGACTTTGCTTTCAGCAAAGCTGAGGATTTAGTAGCCATGTTTGGAGGTGGTTCAGGGTTTGAGGAAGACATTGATTTTCTGTTGAGCACAGAGCCTTGTTGTGAGACTGGGAGTGATGTCAATATGAGAGCAGTTTTTGATAGCATTGAATGTGGTGAGGGTGGTGGAAACATGGTGCATGGGGATAACAAGCAGAAGGAGATACTATCTTTTGCATCTTCTTCTCCATCATCTACAACAACTTCAGTTTCTTGTAACTATGCTTAG 1191 0.4282 MKRSPSSSCSSSSETPIAEQGKRRPNYPRRNNLKSQKCKQNQTTCRRSSVYRGVTRHRWTGRFEAHLWDKTSWNNIQSKKGKQVYLGAYDTEEAAARTYDLAALKYWGKDAVLNFPIGNYTKDLEEIDKVSKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDLAAIEYRGLNAVTNFDISNYIDKRKKDQTQETVAQRETVPNSSDSEEAEVEQQQNTTTPTPSENLHMAAVQHNQVPHTPLKEESSSLVTIMDHVLEQDLPWSFMYTGVSEFQDQDFAFSKAEDLVAMFGGGSGFEEDIDFLLSTEPCCETGSDVNMRAVFDSIECGEGGGNMVHGDNKQKEILSFASSSPSSTTTSVSCNYA 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9032g00001 396 SUPERFAMILY DNA-binding domain 49 117 IPR016177 GO:0003677
Vium9032g00001 396 ProSiteProfiles AP2/ERF domain profile. 50 116 IPR001471 GO:0003700|GO:0006355
Vium9032g00001 396 MobiDBLite consensus disorder prediction 227 256 - -
Vium9032g00001 396 CDD AP2 151 212 IPR001471 GO:0003700|GO:0006355
Vium9032g00001 396 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 25 271 - -
Vium9032g00001 396 MobiDBLite consensus disorder prediction 1 39 - -
Vium9032g00001 396 CDD AP2 49 117 IPR001471 GO:0003700|GO:0006355
Vium9032g00001 396 MobiDBLite consensus disorder prediction 1 19 - -
Vium9032g00001 396 Pfam AP2 domain 151 202 IPR001471 GO:0003700|GO:0006355
Vium9032g00001 396 Pfam AP2 domain 49 108 IPR001471 GO:0003700|GO:0006355
Vium9032g00001 396 SMART rav1_2 50 122 IPR001471 GO:0003700|GO:0006355
Vium9032g00001 396 SMART rav1_2 152 216 IPR001471 GO:0003700|GO:0006355
Vium9032g00001 396 Gene3D AP2/ERF domain 151 212 IPR036955 GO:0003700|GO:0006355
Vium9032g00001 396 Gene3D AP2/ERF domain 50 118 IPR036955 GO:0003700|GO:0006355
Vium9032g00001 396 MobiDBLite consensus disorder prediction 220 256 - -
Vium9032g00001 396 FunFam AP2-like ethylene-responsive transcription factor 49 118 - -
Vium9032g00001 396 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700|GO:0006355
Vium9032g00001 396 FunFam AP2-like ethylene-responsive transcription factor 151 212 - -
Vium9032g00001 396 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Vium9032g00001 396 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700|GO:0006355
Vium9032g00001 396 SUPERFAMILY DNA-binding domain 151 212 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9032g00001 Vium-Chr9032 7539 12745 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9032g00001 22 214 AP2-EREBP Transcription Factor Family AT5G57390 63.918 8.55e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium9032g00001 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9032g00001 - - vra:106754673 758.444