Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9030g00005 ATGATACCACTGAGTCTGATCTCTGAGTGTACCAAGAATTTGGCTAGTGAACATGCACAAGTGGTGCCTATTTCTCTTTTTGTGGCTGTTCTCTGCCTTACTTTGATCATTGGTCACTTGTTTGAAAGAAATCGATGGATTAATGAATCCATAGTTGCCATCATAATAGGAATCATTGCTGGAATTATACTGTTATTGATCAGCAAAGGAAAGAGTTCTCGCATCCTTACATTTAATGAAGAACTATTCTTCATATATCTCCTTCCTCCCATAATATTCAATGCAGGATTTCAGGTGAAGAAGAAACAATTCTTCCATAACTTTTTAACCATCATGATGTTTGGTGTCATCGGTGTTTTCATTTCAACTTTTGTTATTACTTGCGGCAGCTGGTGGATATTCCCCAAGTTGAACTTGCTTGGCCTGACAGCGAAAGATTATCTTGCTATAGGAACAATTTTCTCAGCAACGGACACAGTTTGTACCCTGCAGGTTCTGCATCAAGATGAGACTCCTTTACTTTACAGCCTAGTCTTTGGGGAAGGAGTGGTAAATGATGCCACATCAGTTGTTCTCTTCAATGCAGTGCAAAAGCTTGATGTTTCAAAATTTAGCAGCAAGACATTCCGGTTTATTGGAGATTTCTTCTATCTATTCGGATTAAGCACTGGTCTAGGAGTTCTAGCTGGCCTCCTCACATCATATATCTTGAAAGCCTTATGCTTTGGAAGACATTCAAGTGTTCGTGAAATTGCATTGATGATATTAAAGGCATACCTATCCTATATGTTGGCAGAGCTATGTGATCTAAGTGGAATCATCACCGTTTTCTTTTGTGGAATACTCATGTCACATTATGCATGGTATAATATGGCTGAAACTTCAAGAATCACAACCAGGCATGTGTTTGCAACAATGTCATTTATTGCAGAAACCTTCATATTCCTATATGTGGGCATGGATGCCCTTGACATTGAGAAGTGGAAGATGACTAAATTAAGTTACGGAAGTTTGATGGGGATATACAGTTCCTTAATCCTATTGATATTGGTTGGGCGTGCTGCTTTTGTTTTCCCTCTCTCTGCTATTGCCAATTATACAAACACACGTGCCAGTTCTGACCAAGCATCACGCATCACTTTCAGACAGCAGATAATCATTTGGTGGGCAGGGCTAATGAGGGGAGCTGTCTCCATTGCTCTGGCTTTCAAACAGTTCACATTTTCTGGAGTTACTTCTGATCCAGTTAATGCAACAATGATTACCAACACCATTATTGTTGTCCTTTTCAGCACACTGGTGTTTGGTTTTCTCACAAAACCATTAATAAGATATCTGCTACCCCACGCTGCTACAAGGAAAAACATCATCCATGAAGAACCAGGTTCACGAATTGAGGACTTGAATCTACCTTTGCTATCCCTTGAGGAGTCCGCAGCCACCAACATCAGCCGCGCAAAGGAAAGTTTGTCCATGTTAATAGAAAGTCCTGTGTTCACCATACATCACTTTTGGAGGAGGTTTGATGATGCCTACATGAGACCTTTTTTTGGGGGACCTCATAATAACGGGTCACAGTGCTAG 1584 0.4047 MIPLSLISECTKNLASEHAQVVPISLFVAVLCLTLIIGHLFERNRWINESIVAIIIGIIAGIILLLISKGKSSRILTFNEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISTFVITCGSWWIFPKLNLLGLTAKDYLAIGTIFSATDTVCTLQVLHQDETPLLYSLVFGEGVVNDATSVVLFNAVQKLDVSKFSSKTFRFIGDFFYLFGLSTGLGVLAGLLTSYILKALCFGRHSSVREIALMILKAYLSYMLAELCDLSGIITVFFCGILMSHYAWYNMAETSRITTRHVFATMSFIAETFIFLYVGMDALDIEKWKMTKLSYGSLMGIYSSLILLILVGRAAFVFPLSAIANYTNTRASSDQASRITFRQQIIIWWAGLMRGAVSIALAFKQFTFSGVTSDPVNATMITNTIIVVLFSTLVFGFLTKPLIRYLLPHAATRKNIIHEEPGSRIEDLNLPLLSLEESAATNISRAKESLSMLIESPVFTIHHFWRRFDDAYMRPFFGGPHNNGSQC 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9030g00005 527 PRINTS Na+/H+ exchanger signature 82 93 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium9030g00005 527 PRINTS Na+/H+ exchanger signature 151 161 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium9030g00005 527 PRINTS Na+/H+ exchanger signature 96 110 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium9030g00005 527 PRINTS Na+/H+ exchanger signature 111 119 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium9030g00005 527 PANTHER SODIUM/HYDROGEN EXCHANGER 17 520 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vium9030g00005 527 Pfam Sodium/hydrogen exchanger family 29 443 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vium9030g00005 527 NCBIfam sodium/hydrogen exchanger 3 22 464 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium9030g00005 527 Gene3D - 142 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9030g00005 Vium-Chr9030 65528 70460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9030g00005 11 527 Antiporters AT5G55470 68.008 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9030g00005 - - gmx:100813332 883.248