Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9030g00001 ATGGCATCTTCAGATGACGAGGGAGAGTCTCAGCCACTATCTGTGTCAAATTACTATTTTGAAGATTACAAAGATGTGCCGGTGTGTTTTTCCGTGTTACCAATTGTGTGGAGTGAGTCAGAGAGTCCAGTTAGCAAGAAAGTACAGGTGTTTTTGCGTGGTTTTGCAGATAATGGGCTGCAGAAGATTTTCATGCAAGTTGTTGCGTGGAGGTTTGATCTTTCCTATGTGAGGCCTGAGATATCGGTCTTGTCAAAGGATGGGAGATGGATTAAACTCGAGAAGCCTAGGAAAAGCTACGAGGAAACAATAAGATCTATTTTGATCACCATTCACTTCATGGGTTATGTGAAGAGGAATCCTGACTCATCTGCCAAGTCTGCGTGGGATAGCTTGAGTAAGAATAAGGAGTTTAGATCTTATGAAGTTATGCCTTCGCAAAATGATATATTAAATCATATGACTTTAATGGGTGAAGCTGCCAAAAGAGATGCTGGCTTAGCAAAGTCCAAGCTTTTCCTCATGGTTCGGGAAGATAAACATAAGCTGAAGATTAAGAAACTTTCTGATGAGGAAGTTAAAGATTTAGCACGACCTGGATTTATAACTGACGATACTGACAATGATTTGATTGATGAAATTGATGATGATTCAGATGGGGAGGATGGGTTGTTTGATTCTGTTTGTGCGATTTGTGACAATGGTGGCGAACTTTTGTGTTGTGATGGAAAGTGCATGAGGTCATTTCATGCTAATGAGGAGGATGGTGAAGAATCTGCTTGTGCCTCTCTTGGTTTTAGCCAGAAGCAAGTTGATGATATCCAGAACTTCTACTGTAAGAATTGTGAATATAATCAACATCAGTGCTTTGCATGTGGTACTCTAGGCTGCTCTGATAAATTTTCTGGTGCTGAGGTCTTCAAATGTGCGTCTGCAACCTGTGGTTTCTTTTATCATCCACAATGTGTTGCAAAGTTACTTCACCGGGTAGTTGAGGAGGCTCCAGATCCGAAGGAACTTGAGAGAAATATTGCTGAAGGAGGAGCTTTTACTTGTCCTACTCATTACTGTTGTGTCTGTAAAGGAATGGAAGACAAAAACGAACATGATTTTCACTTTGCTGTTTGTAGGCGTTGCCCCAAGTCCTACCATCGCAAATGCTTGCCAAGGAAGATTGCATTTGATGACATAGAGGATGAAGATATTGTAACAAGGGCTTGGGAAGACCTTCTACCCAACAATCGCATTCTTATATATTGTTTAAAACATGAGATTGATGATGAATTTGGGACTCCTCTAAGGGATCATATAAAGTTTCCCAATGTAAAAGCTTCTGTTCGAGAAGTTAATGATGAGGACAATGAAAAGCCTGCAAACAAAGAGAGGGTTATATTGGACAAGAACAGCACTGTCTCTGAAAGTTTAATTGACAAAAAGGCTGCTTTGAAATTTTCTAATAAACTGTCTGGTAAAGTGTCTTCTGGAAAAGTGGTTGACAAGAAGTCTGAAAAGATTTCTGGATCAAATATCTCAAGGAAGAAAACAAATGAGGCATCAAGAAGGGGTTTGAATGAAAGTAAGAGGCCATTAGTCCCAAAGGAAACCAGAAAGTCTGAGGGTGCAGAAAATAAGTCCTCATTGGGTGCAAAATTATTTGCCTTTTGGCAAAATGGTTCTGAGCAAATTAATTCTGGTAATAAGGTTAATAATGTAGCTAATAATTCCCGGCATGTTAAGCCTACTAAAAAGCTGAGTAGTGCGTTACCCTCATTAGATGAAGATGCAGAGAGGAGATTGGTGGCTATGTTTAAAGAAGCTACTTCATCAGTTACTTTGGAGGATGTTGTAAAAGAGCACAATTTTGTTAGTACTCATACCCACTCATTGAAAAATGTTGTGGAGAAAACCATTACGTTGGGGAAATTGGAAGGCTCAGTTGAGGCTGTTCGAACAGCTCTAAGGATGCTAGAGGGTGGGCACAATGTTCGGGATGCTGCAGCTGTTTGTGGTCCTGATGTTCTTAACCAAATATTTAAGTGGAAGGATAAGCTGAAAGTATATCTTGCACCTGTTCTATATGGTAATCGGTACACATCGTTTGGCCGCCATTTTACACAAGTTGAAAAGCTGGAAGGGGTATTCTTACTATACTTTTTCTATTATTATTATTATTATTTTATTTATTCTGTTAAATTCTTTTACCTATTTAACTATATATATGTGTGTGTGTGTGGGTATGTATAG 2244 0.3917 MASSDDEGESQPLSVSNYYFEDYKDVPVCFSVLPIVWSESESPVSKKVQVFLRGFADNGLQKIFMQVVAWRFDLSYVRPEISVLSKDGRWIKLEKPRKSYEETIRSILITIHFMGYVKRNPDSSAKSAWDSLSKNKEFRSYEVMPSQNDILNHMTLMGEAAKRDAGLAKSKLFLMVREDKHKLKIKKLSDEEVKDLARPGFITDDTDNDLIDEIDDDSDGEDGLFDSVCAICDNGGELLCCDGKCMRSFHANEEDGEESACASLGFSQKQVDDIQNFYCKNCEYNQHQCFACGTLGCSDKFSGAEVFKCASATCGFFYHPQCVAKLLHRVVEEAPDPKELERNIAEGGAFTCPTHYCCVCKGMEDKNEHDFHFAVCRRCPKSYHRKCLPRKIAFDDIEDEDIVTRAWEDLLPNNRILIYCLKHEIDDEFGTPLRDHIKFPNVKASVREVNDEDNEKPANKERVILDKNSTVSESLIDKKAALKFSNKLSGKVSSGKVVDKKSEKISGSNISRKKTNEASRRGLNESKRPLVPKETRKSEGAENKSSLGAKLFAFWQNGSEQINSGNKVNNVANNSRHVKPTKKLSSALPSLDEDAERRLVAMFKEATSSVTLEDVVKEHNFVSTHTHSLKNVVEKTITLGKLEGSVEAVRTALRMLEGGHNVRDAAAVCGPDVLNQIFKWKDKLKVYLAPVLYGNRYTSFGRHFTQVEKLEGVFLLYFFYYYYYYFIYSVKFFYLFNYIYVCVCGYV 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9030g00001 747 CDD PHD2_NSD 288 355 - -
Vium9030g00001 747 SMART PHD_3 228 283 IPR001965 -
Vium9030g00001 747 SMART PHD_3 288 356 IPR001965 -
Vium9030g00001 747 SMART PHD_3 357 424 IPR001965 -
Vium9030g00001 747 Pfam Cytosine specific DNA methyltransferase replication foci domain 15 133 IPR022702 -
Vium9030g00001 747 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 403 IPR013083 -
Vium9030g00001 747 MobiDBLite consensus disorder prediction 493 543 - -
Vium9030g00001 747 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 285 IPR013083 -
Vium9030g00001 747 MobiDBLite consensus disorder prediction 494 543 - -
Vium9030g00001 747 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 5 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9030g00001 Vium-Chr9030 6956 27048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9030g00001 215 329 PHD Transcription Factor Family AT3G14980 32.174 7.79e-07 50.8