Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9021g00002 ATGAGAAACAGTTTGGACATGATGAGCAGAGAGAGAACATTGTTGGTGGTACTTTTACTTATTCTAATCCACCATATTTGTGCTACCAAGGACCACCAAGAACACCTTTGTCCCCCTTCTTCCTGCGGCTACATCACCAACATCACTTATCCATTTCGATTACAAGGCCACCCAGAGAATTGTGGTGACGAAAGGTACGAGCTTGGTTGTCAGAATAATGTTACTGTGTTGTATCTGAACTCTGCACAATTCCATGTTCAGGCAATCAACTACGACAACTACACCGTGAGAGTGGTTGACCCTGCTCTTCAACACCACAACTGCTCCTCCCTTCCTCTTCGTTCCCTCTCTCGCTCCAATTTCTCTGATACTTACACTGACTCCGCGGATCTATACATAGCCAGTCTATATCTGTATCTAAATGGGGAATCTCTGAGTTTCGAGCATATAGTGTTTCTGAACTGTAACCATTCGGTGAGAGAGAACGGGAAGTATGTGGAGAGTGGTGAGTGCGTGAAGTGGGACTCAAAAGGCTATGCATATGCAGTTGGTGGAGACCTAAAAGCTGAGGACTTAGAAGTTGGGTGTGACGTGAAGCTTGTTGCTCCCACATCGTTCGGGACTTTCAATAAGCATTCATACGCTGCCATTCACAGGGCTCTCGCCTATGGATTTGAGATCTCTTGGATAAACCTCGCCTGTCAGAATCATTGTCCTAAAGATTTTTGCGATTTCAACTCTTCTAGCCAGACGCTTGTTTGCGATCCATTTGGTGCGTCGTATATTATTAACTTCGTCTACTTTTCTGTAACTACACATGTAAAATTTCTTGCAGGCATGCTTACTGGTATGGCCGCTTACAAAATTTTGTTTGGATTGCCATTCTTAATTGTGATTTTCATATGTAAATGGAGGAAAAGACATTCATCAATGTATGAAAATATTGAAAATTACCTTGAACAAAATCACTTAACACCTATCAGATACTCATACAAGGAAATTAAGAAGATGACGGGAAGTTTCAAAGAGAAGTTAGGTGAAGGAGGATTTGGCTCTGTGTTTAAGGCAAAGTTACGGAGCGGACCTTCTGTGGCAATCAAAATGTTAGGTAAAGCCAAAGGAAATGGACAAGATTTTATCAATGAAGTTGCAACTATCGGAAGAATACATCATCAAAATGTGGTACAATTAATTGGATTTTGTGTTAGTGGCTCAAAGCGCGCTCTTGTTTATGAATTCATGCCCAATGGATCTCTTGATAAATTTATATTTTCAGGAAATGAAAATACAGATTTTAGCTATGAAAAAATATATAAGATATCGATTGGAGTAGCTCGTGGAATTGCTTATCTCCATCATGGATGTGAGATGCAGATTTTGCATTTTGATATCAAACCCCATAATATCTTATTGGATGAAAACTTCATCCCAAAGGTTTCTGACTTTGGATTAGCAAAGTTATATCCAATAGATAATAGCTTAGTCACAATGACACAAGCAAGAGGAACCATTGGATATATGGCTCCAGAATTGTTTTACAATAATATTGGAGGAATATCCAACAAAGCTGATGTTTATAGTTTCGGAATGTTGTTGATGGAGATGGCTAGTAAGAGGAAAAATCTAAATCCCAATGCAGAACACTCAAGTCAACTTTACTTTCCCCTTTGGATATATGATCATATTAGAGAAGAGGAAGATATAGATATAAAGGATTTGAGCGAAGAGGAAAAGCTAATAGTAAAGAAAATGATCATAATTGCACTTTGGTGTATACAGTTAAAACCAAAGGATCGTCCCTCAATGAACAGAGTTGTAAAAATGCTTGAAGAAGACATTGAAGATTTGGAAATACCTCCAAAACCTACTTTATATCCTAATGAAATGATTTTAGAGGATCAAACAACCAGTTCTATCTAA 1920 0.3854 MRNSLDMMSRERTLLVVLLLILIHHICATKDHQEHLCPPSSCGYITNITYPFRLQGHPENCGDERYELGCQNNVTVLYLNSAQFHVQAINYDNYTVRVVDPALQHHNCSSLPLRSLSRSNFSDTYTDSADLYIASLYLYLNGESLSFEHIVFLNCNHSVRENGKYVESGECVKWDSKGYAYAVGGDLKAEDLEVGCDVKLVAPTSFGTFNKHSYAAIHRALAYGFEISWINLACQNHCPKDFCDFNSSSQTLVCDPFGASYIINFVYFSVTTHVKFLAGMLTGMAAYKILFGLPFLIVIFICKWRKRHSSMYENIENYLEQNHLTPIRYSYKEIKKMTGSFKEKLGEGGFGSVFKAKLRSGPSVAIKMLGKAKGNGQDFINEVATIGRIHHQNVVQLIGFCVSGSKRALVYEFMPNGSLDKFIFSGNENTDFSYEKIYKISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSLVTMTQARGTIGYMAPELFYNNIGGISNKADVYSFGMLLMEMASKRKNLNPNAEHSSQLYFPLWIYDHIREEEDIDIKDLSEEEKLIVKKMIIIALWCIQLKPKDRPSMNRVVKMLEEDIEDLEIPPKPTLYPNEMILEDQTTSSI 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9021g00002 639 SUPERFAMILY Protein kinase-like (PK-like) 323 610 IPR011009 -
Vium9021g00002 639 FunFam PR5-like receptor kinase 414 621 - -
Vium9021g00002 639 Pfam Wall-associated receptor kinase galacturonan-binding 37 100 IPR025287 GO:0030247
Vium9021g00002 639 SMART serkin_6 339 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9021g00002 639 FunFam serine/threonine-protein kinase PBS1-like 307 413 - -
Vium9021g00002 639 ProSiteProfiles Protein kinase domain profile. 339 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9021g00002 639 Gene3D Transferase(Phosphotransferase) domain 1 414 618 - -
Vium9021g00002 639 Pfam Protein kinase domain 342 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9021g00002 639 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Vium9021g00002 639 Gene3D Phosphorylase Kinase; domain 1 312 413 - -
Vium9021g00002 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Vium9021g00002 639 PANTHER RUST RESISTANCE KINASE LR10-RELATED 312 628 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9021g00002 Vium-Chr9021 12601 18827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9021g00002 15 625 Receptor kinase-like Gene Family AT5G38260 35.152 1.77e-121 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium9021g00002 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9021g00002 - - vra:106763726 938.332