Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9021g00001 ATGGCCGCTTACAAAATTTTGTTTGGATTGCCATTCTTAATTGTGATTTTCATATGTAAATGGAGGAAAAGACATTCATCAATGTATGAAAATATTGAAAATTACCTTGAACAAAATCACTTAACACCTATCAGATACTCATACAAGGAAATTAAGAAGATGACGGGAAGTTTCAAAGAGAAGTTAGGTGAAGGAGGATTTGGCTCTGTGTTTAAGGCAAAGTTACGGAGCGGACCTTCTGTGGCAATCAAAATGTTAGGTAAAGCCAAAGGAAATGGACAAGATTTTATCAATGAAGTTGCAACTATCGGAAGAATACATCAACAAAATGTGGTACAATTAATTGGATTTTGTGTTAGTGGCTCAAAGCGAGCTCTTGTTTATGAATTCATGCCCAATGGATCTCTTGATAAATTTATATTTTCAGGAAATGAAAATACAGATTTTAGCTATGAAAAAATATATAAGATATCGATTGGAGTAGCTCGTGGAATTGCTTATCTCCATCATGGATGTGAGATGCAAATTTTGCATTTTGATATCAAACCCCATAAAATATTATTGGATGAAAACTTCATCCCAAAGGTTTCTGACTTTGGATTAGCAAAGTTATATCCAATAGATAATAGCTTAGTCACAATGACAAAAGCAAGAGGAACCATTGGATATATGGCTCCAGAATTGTTTTACAATAATATTGGAGGAATATCCAACAAAGCTGATGTTTATAGTTTCGGAATGTTGTTGATGGAGATGGCAAGAAAGAGGAAAAATCTAAATCCCAATGCAGAACACTCAAGTCAACTTTACTTTCCCCTTTGGATATATGATCATATTAGAGAAGAGGAAGATATAGATATAAAGGATTTAAGCGAAGAGGAAAAGCTAATAGTAAAGAAAATGATCATAATTGCACTTTGGTGTATACAGTTAAAACCAAAGGATCGTCCCTCAATGAACAGAGTTGTAGAAATGCTTGAAGAAGACATTGAAGATTTGGAAATACCTCCAAAACCTACTTTATATCCTAATGAAATGATTTTAGAGGATCAAACAACAAGTTCTATCTAA 1071 0.3333 MAAYKILFGLPFLIVIFICKWRKRHSSMYENIENYLEQNHLTPIRYSYKEIKKMTGSFKEKLGEGGFGSVFKAKLRSGPSVAIKMLGKAKGNGQDFINEVATIGRIHQQNVVQLIGFCVSGSKRALVYEFMPNGSLDKFIFSGNENTDFSYEKIYKISIGVARGIAYLHHGCEMQILHFDIKPHKILLDENFIPKVSDFGLAKLYPIDNSLVTMTKARGTIGYMAPELFYNNIGGISNKADVYSFGMLLMEMARKRKNLNPNAEHSSQLYFPLWIYDHIREEEDIDIKDLSEEEKLIVKKMIIIALWCIQLKPKDRPSMNRVVEMLEEDIEDLEIPPKPTLYPNEMILEDQTTSSI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9021g00001 356 FunFam PR5-like receptor kinase 131 338 - -
Vium9021g00001 356 Gene3D Transferase(Phosphotransferase) domain 1 131 335 - -
Vium9021g00001 356 Gene3D Phosphorylase Kinase; domain 1 29 130 - -
Vium9021g00001 356 ProSiteProfiles Protein kinase domain profile. 56 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9021g00001 356 Pfam Protein kinase domain 59 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9021g00001 356 FunFam serine/threonine-protein kinase PBS1-like 24 130 - -
Vium9021g00001 356 ProSitePatterns Protein kinases ATP-binding region signature. 62 84 IPR017441 GO:0005524
Vium9021g00001 356 PANTHER RUST RESISTANCE KINASE LR10-RELATED 29 345 IPR045874 GO:0004672
Vium9021g00001 356 SUPERFAMILY Protein kinase-like (PK-like) 40 327 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9021g00001 Vium-Chr9021 8609 9744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9021g00001 2 354 Receptor kinase-like Gene Family AT4G18250 46.832 1.33e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium9021g00001 PK_Tyr_Ser-Thr 8.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9021g00001 - - vum:124829708 648.662