Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9020g00001 ATGGGTAGATCACCGTGTCGTGAGGAGATTAGTGGTGTAAAGAAAGGACCATGGACACCAGAAGAAGATGAGAAGCTGATTGATTATATCAGCAAACACAGCCATGGCAGTTGGAGAACGCTTCCAAAGCGTGCAGGGCTTAATAGATGTGGTAAGAGCTGCAGATTAAGGTGGACAAACTATCTGAGGCCTGATATCAAGAGAGGCCAATTCACTGAAGAAGATGAGAGAACTATCATCAACCTTCATTCAGTTCTGGGAAACAAGTGGTCGAAGATTGCAGCTCATCTGCCAGGGCGAACTGATAATGAGATCAAGAATTATTGGAACACTCACATAAGGAAGAAGCTTCTAAAGATGGGTATTGATCCAGAAACTCACAAGCCAAGGACAGACTTGAATCACCTCATGAGTCTTTCTCAGTTGCTTGGTATGTCAAACTTGAGCAGTGTTATGAGTAGTACTTGGGGCAATAACCATCTTGGTTTACAACCAGACATCACTCAGCTAGCCAAGATACAACTGCTGCAAAATCTTTTGCAACTTATGAACAGCAATTCATTTGTTAACATGGGTAACCCTTACCTCTTTGGCAATCCCAACCTCAACCCTTTATTTCTGAACGGCACAAACCCCCTCCAAACTAAGGAGCCTGTGGTGTTAAGTGGTAGTGAAAGATTTGCTAACCCTAGTGTGTACTCTCAAGCACAAAGCGAGTGCTCTCAGCAACAGGATGTTTCAAAATCATTGGCAGATGTGGAGGGTGGATCCATTCCACAAGATCTTGATTACAGCAAAATTAGCCCCACCAACACCAATCATTCACGTGAAAATCAAGAAGAAAACCCTCTCCCTGCATTAGTTGCTGCCTCTCCGAGGATGGGAACCTTAAACCCAATGGGCAGTGGTTGTGGTAACTTAGGACAATCGAGCGAAGAGTCACCTTCGAACACATTCTTTGATGATTGGGAGAAGTTGTTTGATGATGAAAGAAGCGGTTCCTATTGGAAAGAGATTCTAGAGTAA 1026 0.4366 MGRSPCREEISGVKKGPWTPEEDEKLIDYISKHSHGSWRTLPKRAGLNRCGKSCRLRWTNYLRPDIKRGQFTEEDERTIINLHSVLGNKWSKIAAHLPGRTDNEIKNYWNTHIRKKLLKMGIDPETHKPRTDLNHLMSLSQLLGMSNLSSVMSSTWGNNHLGLQPDITQLAKIQLLQNLLQLMNSNSFVNMGNPYLFGNPNLNPLFLNGTNPLQTKEPVVLSGSERFANPSVYSQAQSECSQQQDVSKSLADVEGGSIPQDLDYSKISPTNTNHSRENQEENPLPALVAASPRMGTLNPMGSGCGNLGQSSEESPSNTFFDDWEKLFDDERSGSYWKEILE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9020g00001 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vium9020g00001 341 Gene3D - 70 117 - -
Vium9020g00001 341 MobiDBLite consensus disorder prediction 263 280 - -
Vium9020g00001 341 CDD SANT 71 113 IPR001005 -
Vium9020g00001 341 MobiDBLite consensus disorder prediction 232 284 - -
Vium9020g00001 341 MobiDBLite consensus disorder prediction 232 250 - -
Vium9020g00001 341 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vium9020g00001 341 MobiDBLite consensus disorder prediction 302 317 - -
Vium9020g00001 341 MobiDBLite consensus disorder prediction 297 321 - -
Vium9020g00001 341 Gene3D - 14 67 - -
Vium9020g00001 341 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vium9020g00001 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vium9020g00001 341 FunFam MYB-related transcription factor 14 67 - -
Vium9020g00001 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 260 - -
Vium9020g00001 341 FunFam Transcription factor MYB39 70 131 - -
Vium9020g00001 341 SMART sant 14 64 IPR001005 -
Vium9020g00001 341 SMART sant 67 115 IPR001005 -
Vium9020g00001 341 CDD SANT 17 62 IPR001005 -
Vium9020g00001 341 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vium9020g00001 341 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Vium9020g00001 341 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9020g00001 Vium-Chr9020 6897 8164 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9020g00001 1 341 MYB Transcription Factor Family AT5G16770 48.725 2.92e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium9020g00001 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9020g00001 K09422 - gmx:778082 523.472