Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9011g00002 ATGCCGGCTGGTCACGGTTTGAGATCTCGCACGAGAGATTCATTCTCTCGTCCCTTCAGGAAGAAGGGAACCATCGCCCTCACTACTTATCTCAGAACTTACCACATCGGCGATTACGTCGACATCAAGGTTAACGGCGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCATGGCCGCACCGGTCGTGTTTGGAACGTCACCAAACGCGCCATTGGTGTCGAGGTTAACAAACAGGTGGGGAACAGAATTATTAGAAAGAGGATTCATGTGCGTGTTGAGCATGTTATGCCTTCAAGGTGCACTGAGGAGTTCCGTTTGAGGAAGATCAAGAATGATCAACTCAAGGCGGATGCTAAGGCAAAGGGTGAGAAAATTAGCACCAAGAGACAACCTGAGGGTCCCAAACCAGGTTTCCTTATGGTGGAAGGAGCTCTAATTGAAACTGTAACTCCCATTCCCTATGACGTGGTTAATGATCTTAAAGGAGGATATTAG 498 0.4839 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKADAKAKGEKISTKRQPEGPKPGFLMVEGALIETVTPIPYDVVNDLKGGY 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9011g00002 165 SUPERFAMILY Translation proteins SH3-like domain 3 99 IPR008991 -
Vium9011g00002 165 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
Vium9011g00002 165 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
Vium9011g00002 165 Gene3D - 99 157 - -
Vium9011g00002 165 PANTHER 60S RIBOSOMAL PROTEIN L21 1 164 IPR001147 GO:0003735|GO:0005840|GO:0006412
Vium9011g00002 165 FunFam 60S ribosomal protein L21 99 159 - -
Vium9011g00002 165 FunFam 60S ribosomal protein L21 1 98 - -
Vium9011g00002 165 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9011g00002 Vium-Chr9011 10376 11453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9011g00002 1 165 Cytoplasmic Ribosomal Protein Gene Family AT1G57860 82.424 6.51e-102 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9011g00002 K02889 - gmx:100305629 328.176